PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1vzia1  (  38 )          entvdaakakHvPvIekid-------gGYkVkVGa-vaHpMeek
d3qzba1  (   1 )    mklsdfiktedfkkekHVPvIeApekVkkdekVqIvVtVGkeipHpntte
                                      bbbb           bbbbbb           

                             60        70        80        90        100 
d1vzia1  (  74 )    hyIqwIeLlAd-------dkcytqfLkpg-------------qapeavfl
d3qzba1  (  51 )    hHIrwIkVffqpdgdpyvyevgryeFnaHGesvqgpnigavyteptvttv
                      bbbbbbbb         bbbbbb                    bbbbb

                             110       120       130 
d1vzia1  ( 104 )    Ieaa---kVvArEyCnihghWkaen      
d3qzba1  ( 101 )    vklnrsGtIiAlSyCnihglwessqkItVee
                             bbbbbb   bbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1vzia1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1vzia1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Desulfoferrodoxin C-terminal domain	Superoxide reductase-like	Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]		view
d3qzba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3qzba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thermotoga maritima [TaxId: 2336]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1vzia1	A	Q46495	GO:0005506
d1vzia1	A	Q46495	GO:0009636
d1vzia1	A	Q46495	GO:0016491
d1vzia1	A	Q46495	GO:0019430
d1vzia1	A	Q46495	GO:0046872
d1vzia1	A	Q46495	GO:0050605
d1vzia1	A	Q46495	GO:0005506
d1vzia1	A	Q46495	GO:0009636
d1vzia1	A	Q46495	GO:0016491
d1vzia1	A	Q46495	GO:0019430
d1vzia1	A	Q46495	GO:0046872
d1vzia1	A	Q46495	GO:0050605

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