Superfamily : 49354 [ PapD-like ]
Class : All beta proteins
Fold : Immunoglobulin-like beta-sandwich
# of Members : 6
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1m1sa1  ( 101 )               InVdpp-tGnYpat---ggnstHnItSesdsrLAFkVks
d1mspa-  (   3 )         svpPgdInTqpsqkIvFnapyd----tyhIItNagg-rIGWaI-t
d1wica1  (   8 )    kkplsvfkGpllhispaeelyFGsiesgekktlivltnvtknivAFkvrt
d2cria1  (   8 )    mak----heqilvldppsdlkFkGpFtdvvttnlklqnpsdrkvCFkvkt
d2xg5a1  (   1 )              aVsLdr-trAvFdGs----esmtLdIsNdnqlpylAqAwI
d4ay0a1  (  13 )          gvtiges-----riiYpla----aGvmvsvnt-----ypvliSI
                                       bbbb        bbbb b      bbbbb  

                             60        70        80        90        100 
d1m1sa1  ( 136 )    snn-------ehYrVrpvygfVdakgkskLdInRl------pgppkedkI
d1mspa-  (  48 )    tn---------rLsVdppcgVLdpk-evlMaVscd---tfaatedlnDrI
d1wica1  (  58 )    tap-------ekYrvkpsnsSCdpgasidiivsphggltvsa----qDrF
d2cria1  (  54 )    tap-------rrYcvrpnsgiidpgsivtvsvmlq-pfdydpnekskhkF
d2xg5a1  (  38 )    EnenqekiitgpViAtppvqrLepgaksmVrLsttpdisklpq-dreslF
d4ay0a1  (  49 )    ydenkee--sdpFvVtpplfrld----nsLrIaqagg--vFpr-dkeslk
                                bbbb  bbbb      bbbbbb              bb

                             110       120       130       140       150 
d1m1sa1  ( 173 )    vIQyAeVpa-----eetdpapFka----gaqqgeiiVkLiAa        
d1mspa-  (  90 )    tIeWtnTpdgaakq---frewfqgd----gmvrrknLpIeYnl       
d1wica1  (  97 )    limAAeMeqsSgtgpaelsqfWkevprnkvmehrlrChtv-------ess
d2cria1  (  96 )    mvqtifAppnis----dmeavWkeakpdelmdsklrCvfempnendk---
d2xg5a1  (  87 )    yFNLrEippseka-----------nvlqialqtkikLfYrP-aaiktrp 
d4ay0a1  (  96 )    wvg-ipp-----------------------nçikLlVrP-nel     
                    bbbbbb                          bbbbbbbb          

                           
d1m1sa1                    
d1mspa-                    
d1wica1  ( 140 )    kpnslml
d2cria1  ( 139 )    ----lnd
d2xg5a1                    
d4ay0a1                    
                           

 

 

Domain IDNameFamilySourceDomainSTRING-DB
WR4MSP-likeNematode (Caenorhabditis elegans) [TaxId: 6239]view
Major sperm protein, MSPMSP-likePig roundworm (Ascaris suum), alpha isoform [TaxId: 6253]view
MSP domain containing protein 2, Mospd2MSP-likeMouse (Mus musculus) [TaxId: 10090]view
automated matchesautomated matchesMouse (Mus musculus) [TaxId: 10090]view
Pilus chaperone PapD, N-domainPilus chaperoneEscherichia coli [TaxId: 562]view
automated matchesautomated matchesYersinia pestis [TaxId: 632]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150
- - - - - - - - - - - I N V D P P - T G N Y P A T - - - G G N S T H N I T S E S D S R L A F K V K S S N N - - - - - - - E H Y R V R P V Y G F V D A K G K S K L D I N R L - - - - - - P G P P K E D K I V I Q Y A E V P A - - - - - E E T D P A P F K A - - - - G A Q Q G E I I V K L I A A - - - - - - - - - - - - - - -
- - - - - S V P P G D I N T Q P S Q K I V F N A P Y D - - - - T Y H I I T N A G G - R I G W A I - T T N - - - - - - - - - R L S V D P P C G V L D P K - E V L M A V S C D - - - T F A A T E D L N D R I T I E W T N T P D G A A K Q - - - F R E W F Q G D - - - - G M V R R K N L P I E Y N L - - - - - - - - - - - - - -
K K P L S V F K G P L L H I S P A E E L Y F G S I E S G E K K T L I V L T N V T K N I V A F K V R T T A P - - - - - - - E K Y R V K P S N S S C D P G A S I D I I V S P H G G L T V S A - - - - Q D R F L I M A A E M E Q S S G T G P A E L S Q F W K E V P R N K V M E H R L R C H T V - - - - - - - E S S K P N S L M L
M A K - - - - H E Q I L V L D P P S D L K F K G P F T D V V T T N L K L Q N P S D R K V C F K V K T T A P - - - - - - - R R Y C V R P N S G I I D P G S I V T V S V M L Q - P F D Y D P N E K S K H K F M V Q T I F A P P N I S - - - - D M E A V W K E A K P D E L M D S K L R C V F E M P N E N D K - - - - - - - L N D
- - - - - - - - - - A V S L D R - T R A V F D G S - - - - E S M T L D I S N D N Q L P Y L A Q A W I E N E N Q E K I I T G P V I A T P P V Q R L E P G A K S M V R L S T T P D I S K L P Q - D R E S L F Y F N L R E I P P S E K A - - - - - - - - - - - N V L Q I A L Q T K I K L F Y R P - A A I K T R P - - - - - - - -
- - - - - - G V T I G E S - - - - - R I I Y P L A - - - - A G V M V S V N T - - - - - Y P V L I S I Y D E N K E E - - S D P F V V T P P L F R L D - - - - N S L R I A Q A G G - - V F P R - D K E S L K W L C V G - I P P - - - - - - - - - - - - - - - - - - - - - - - N C I K L L V R P - N E L - - - - - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1mspa_ A P27439 GO:0005737
d1mspa_ A P27439 GO:0005856
d1mspa_ A P27439 GO:0031143
d1mspa_ A P27439 GO:0042995
d1mspa_ A P27439 GO:0005737
d1mspa_ A P27439 GO:0005856
d1mspa_ A P27439 GO:0031143
d1mspa_ A P27439 GO:0042995