PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1p4ua-  ( 579 )         lsLasihvp--lesikpSsalpvtAydk----ngFrIlFhFAkec
d1qtsa1  ( 692 )         gspgirlgssednfarFvcknngvLfen----qlLqIgLkSefr-
d1r4xa1  ( 608 )    trqeifqeqLaavpeFrgLgpLfkSspepvaLteseteYvIrCTkHtFt-
d2a7ba-  ( 703 )                           mipsitAYsk----ngLkIeFtF--er
d2g30a1  ( 705 )    g---------------------gyvapkavwLpavkAkgLeIsGtFthg-
                                                bbbb       bbbbbbb    

                             60        70        80        90        100 
d1p4ua-  ( 618 )    PpgrpdVLVVvVsMlNmap-lpVksIvLqAaAp----ksMkvklQppsgt
d1qtsa1  ( 732 )    ----qnlgrMfIfYgNkts-tqFlnFtPtLiCaddLqtnLnLqtkpV-dp
d1r4xa1  ( 657 )    -----nhMVFqFdCtNtlndqtLenVtVqMep-te---aYevly-vpar-
d2a7ba-  ( 724 )    sntnpsvTvItIqAsNste-ldMtdFvFqAaVp----ktFqlqllspsss
d2g30a1  ( 735 )    ------hiyMeMnFtNka-lqhMtdFaIqFnkNSf---GvipstpLaiht
                          bbbbbbbbbb       bbbbbbbb         bb        

                             110       120       130       140       150 
d1p4ua-  ( 663 )    eLspfspiqppaaItQVMLLANpl----------kekVrLrykLtfalg-
d1qtsa1  ( 776 )    tVdGg------aqvqQvVnIecis----------dFteaPvLnIqFryg-
d1r4xa1  ( 697 )    sLpyn------qpgtCyTlVAlPkedptav------aCtFsCmMkFtVkd
d2a7ba-  ( 769 )    vVpafn----tgtItQvIkVlnpq----------kqqLrMrIkLtYnhk-
d2g30a1  ( 775 )    pLmpn------qsidVsLpLnt-----lgpvmkmeplnnLqVaVkNnid-
                                 bbbbbbbb                  bbbbbbbbb  

                             160       170       180 
d1p4ua-  ( 702 )    ----------eqlstevgevdqFppveqWgnl
d1qtsa1  ( 809 )    ----------gtfqnvsVkLPItlnk      
d1r4xa1  ( 735 )    cdpttgetddeGyedeyvLedLeVt----vad
d2a7ba-  ( 804 )    ----------gsamqdlaeVnnFppqSwq   
d2g30a1  ( 813 )    ------------vfyfscliplnV        
                                bbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1p4ua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1p4ua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	ADP-ribosylation factor binding protein Gga3 domain	gamma-adaptin C-terminal appendage domain-like	Human (Homo sapiens) [TaxId: 9606]	view
d1qtsa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1qtsa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Alpha-adaptin AP2 ear domain, N-terminal subdomain	Alpha-adaptin ear subdomain-like	Mouse (Mus musculus) [TaxId: 10090]	view
d1r4xa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r4xa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Coatomer gamma subunit C-terminal domain, first subdomain	Coatomer appendage domain	Human (Homo sapiens) [TaxId: 9606]	view
d2a7ba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2a7ba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	gamma-adaptin C-terminal appendage domain-like	Mouse (Mus musculus) [TaxId: 10090]	view
d2g30a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2g30a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Beta2-adaptin AP2 ear domain, N-terminal subdomain	Alpha-adaptin ear subdomain-like	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	Y	V	A	P	K	A	V	W	L	P	A	V	K	A	K	G	L	E	I	S	G	T	F	T	H	G	-	-	-	-	-	-	-	H	I	Y	M	E	M	N	F	T	N	K	A	-	L	Q	H	M	T	D	F	A	I	Q	F	N	K	N	S	F	-	-	-	G	V	I	P	S	T	P	L	A	I	H	T	P	L	M	P	N	-	-	-	-	-	-	Q	S	I	D	V	S	L	P	L	N	T	-	-	-	-	-	L	G	P	V	M	K	M	E	P	L	N	N	L	Q	V	A	V	K	N	N	I	D	-	-	-	-	-	-	-	-	-	-	-	-	-	V	F	Y	F	S	C	L	I	P	L	N	V	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1p4ua_	A	Q9NZ52	GO:0005802
d1p4ua_	A	Q9NZ52	GO:0006886
d1p4ua_	A	Q9NZ52	GO:0016192
d1p4ua_	A	Q9NZ52	GO:0031267
d1p4ua_	A	Q15276	GO:0005802
d1p4ua_	A	Q15276	GO:0006886
d1p4ua_	A	Q15276	GO:0016192
d1p4ua_	A	Q15276	GO:0031267
d1qtsa1	A	P17427	GO:0006886
d1qtsa1	A	P17427	GO:0016192
d1qtsa1	A	P17427	GO:0030117
d1qtsa1	A	P17427	GO:0030131
d1qtsa1	A	P17427	GO:0006886
d1qtsa1	A	P17427	GO:0016192
d1qtsa1	A	P17427	GO:0030117
d1qtsa1	A	P17427	GO:0030131
d1r4xa1	A	Q9Y678	GO:0005198
d1r4xa1	A	Q9Y678	GO:0006886
d1r4xa1	A	Q9Y678	GO:0016192
d1r4xa1	A	Q9Y678	GO:0030117
d1r4xa1	A	Q9Y678	GO:0030126
d1r4xa1	A	Q9Y678	GO:0005198
d1r4xa1	A	Q9Y678	GO:0006886
d1r4xa1	A	Q9Y678	GO:0016192
d1r4xa1	A	Q9Y678	GO:0030117
d1r4xa1	A	Q9Y678	GO:0030126
d2g30a1	A	P63010	GO:0006886
d2g30a1	A	P63010	GO:0016192
d2g30a1	A	P63010	GO:0030117
d2g30a1	A	P63010	GO:0030131
d2g30a1	A	Q5SW96	GO:0006886
d2g30a1	A	Q5SW96	GO:0016192
d2g30a1	A	Q5SW96	GO:0030117
d2g30a1	A	Q5SW96	GO:0030131
d2g30a1	A	P63010	GO:0006886
d2g30a1	A	P63010	GO:0016192
d2g30a1	A	P63010	GO:0030117
d2g30a1	A	P63010	GO:0030131
d2g30a1	A	Q5SW96	GO:0006886
d2g30a1	A	Q5SW96	GO:0016192
d2g30a1	A	Q5SW96	GO:0030117
d2g30a1	A	Q5SW96	GO:0030131

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T	R	Q	E	I	F	Q	E	Q	L	A	A	V	P	E	F	R	G	L	G	P	L	F	K	S	S	P	E	P	V	A	L	T	E	S	E	T	E	Y	V	I	R	C	T	K	H	T	F	T	-	-	-	-	-	-	N	H	M	V	F	Q	F	D	C	T	N	T	L	N	D	Q	T	L	E	N	V	T	V	Q	M	E	P	-	T	E	-	-	-	A	Y	E	V	L	Y	-	V	P	A	R	-	S	L	P	Y	N	-	-	-	-	-	-	Q	P	G	T	C	Y	T	L	V	A	L	P	K	E	D	P	T	A	V	-	-	-	-	-	-	A	C	T	F	S	C	M	M	K	F	T	V	K	D	C	D	P	T	T	G	E	T	D	D	E	G	Y	E	D	E	Y	V	L	E	D	L	E	V	T	-	-	-	-	V	A	D
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-	-	-	-	-	L	S	L	A	S	I	H	V	P	-	-	L	E	S	I	K	P	S	S	A	L	P	V	T	A	Y	D	K	-	-	-	-	N	G	F	R	I	L	F	H	F	A	K	E	C	P	P	G	R	P	D	V	L	V	V	V	V	S	M	L	N	M	A	P	-	L	P	V	K	S	I	V	L	Q	A	A	A	P	-	-	-	-	K	S	M	K	V	K	L	Q	P	P	S	G	T	E	L	S	P	F	S	P	I	Q	P	P	A	A	I	T	Q	V	M	L	L	A	N	P	L	-	-	-	-	-	-	-	-	-	-	K	E	K	V	R	L	R	Y	K	L	T	F	A	L	G	-	-	-	-	-	-	-	-	-	-	-	E	Q	L	S	T	E	V	G	E	V	D	Q	F	P	P	V	E	Q	W	G	N	L
-	-	-	-	-	G	S	P	G	I	R	L	G	S	S	E	D	N	F	A	R	F	V	C	K	N	N	G	V	L	F	E	N	-	-	-	-	Q	L	L	Q	I	G	L	K	S	E	F	R	-	-	-	-	-	Q	N	L	G	R	M	F	I	F	Y	G	N	K	T	S	-	T	Q	F	L	N	F	T	P	T	L	I	C	A	D	D	L	Q	T	N	L	N	L	Q	T	K	P	V	-	D	P	T	V	D	G	G	-	-	-	-	-	-	A	Q	V	Q	Q	V	V	N	I	E	C	I	S	-	-	-	-	-	-	-	-	-	-	D	F	T	E	A	P	V	L	N	I	Q	F	R	Y	G	-	-	-	-	-	-	-	-	-	-	-	G	T	F	Q	N	V	S	V	K	L	P	I	T	L	N	K	-	-	-	-	-	-
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