Superfamily : 49329 [ Cu,Zn superoxide dismutase-like ]
Class : All beta proteins
Fold : Immunoglobulin-like beta-sandwich
# of Members : 6
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d1ej8a-  (  78 )       ssAvAiLetfqkYtidqkkdtavRglArIvqvge-nkTlFdItVn--
d1pzsa-  (   1 )       qsltStLta-----pd----gtkVAtAkFefan--gyAtVtIaTtgv
d1xtma-  (  40 )      afghhVqLvn-----re----gkaVgfIeIkeSd-degLdIhIsAn--
d2aqma-  (   1 )       esttVkMyeAl---ptgp--gkeVgtVvIseap--ggLhFkVnMe--
d2jlpa-  (  38 )    dgtlhAaÇqVqpSa---tLdaaqprVtgvVLFrQlaprakLdAFFaLe--
d3f7la-  (   1 )      aihAvCvLkg---------dsp-VtgtIhLkeegd--mVtVtgeIt--
                        bbbbbbb               bbbbbbbb      bbbbbbb   

                             60        70        80        90        100 
d1ej8a-  ( 122 )    -gVpe---agnYhAsIhekgdvs-----------kgvesTgkvwhkFd--
d1pzsa-  (  37 )    gkLtp----gfHGLHIHqvGkçepnsvaptggapgnFlsAGgHyhvpght
d1xtma-  (  76 )    -sLrp---gAsLGFHIHekGsçvrp----------dFesaggHfnplnke
d2aqma-  (  39 )    -kLtp----gyHGFHVHenpsçap-gekdg--kivpAlaAggHydpgnth
d2jlpa-  (  83 )    -gFptepnsssrAIHVHqfGdls-----------qgÇesTgpHYnplavp
d3f7la-  (  35 )    -gLt----pgkHGFHVHefGdnt-----------ngçtsAggHFnphgke
                             bbb bbbb                    33           

                             110       120       130       140       150 
d1ej8a-  ( 155 )    --------------epIeCfnesdlgknLysgktfLsAp------lPTwq
d1pzsa-  (  83 )    g------tpAsGdLasLqVrg-------dGsAmlvtttdaFt-----mdd
d1xtma-  ( 112 )    HGfnnpmGhhaGDLpnLeVga-------dgkVdvimnApdTsLkkgsklN
d2aqma-  (  81 )    hHlGPegdGhmGDLprLsAna-------dgkVsetvvAphLk----kLae
d2jlpa-  ( 121 )    Hp------qHpGDFgnFaVr--------dgsLwryragLaAsLag--phs
d3f7la-  (  69 )    HGApedenRhAGDLgnVvAge-------dgkAvInmkdklVkLtg--pds
                                    bbb            bbbbbbb            

                             160       170       180       190       200 
d1ej8a-  ( 185 )    Li---grSFVIsks-Ln---------hpenepvk------------dYsF
d1pzsa-  ( 115 )    LlsgakTAIIIHagaDnfAnipperyvqvngtpGpdetTlttgdAgkrvA
d1xtma-  ( 155 )    IldedGSAFIIHeqaDdyl-------------------tnpsGnSgariV
d2aqma-  ( 120 )    Ik---qrSLMVHvggDnysdk-----------------peplGgGgarfA
d2jlpa-  ( 155 )    Iv---grAVVVHageDdlgrgg-------------nqaSvenGnAgrrLA
d3f7la-  ( 110 )    Vi---grTLVVHvdeDdlGrgg-------------heqSkitGnAggrlA
                           bbbbb                                   bbb

                             210     
d1ej8a-  ( 212 )    LgvIa            
d1pzsa-  ( 165 )    ÇGvIgs----------g
d1xtma-  ( 186 )    ÇGaLl-----------g
d2aqma-  ( 150 )    ÇgvIe            
d2jlpa-  ( 189 )    ÇÇvVgvcgpglwerqar
d3f7la-  ( 144 )    ÇgvIgitk         
                    bbb
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Copper chaperone for superoxide dismutase, C-terminal domainCu,Zn superoxide dismutase-likeBaker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]view
Cu,Zn superoxide dismutase, SODCu,Zn superoxide dismutase-likeMycobacterium tuberculosis [TaxId: 1773]view
automated matchesautomated matchesBacillus subtilis [TaxId: 1423]view
Cu,Zn superoxide dismutase, SODCu,Zn superoxide dismutase-likeBrucella abortus [TaxId: 235]view
automated matchesautomated matchesHuman (Homo sapiens) [TaxId: 9606]view
automated matchesCu,Zn superoxide dismutase-likeAlvinella pompejana [TaxId: 6376]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
- - - S S A V A I L E T F Q K Y T I D Q K K D T A V R G L A R I V Q V G E - N K T L F D I T V N - - - G V P E - - - A G N Y H A S I H E K G D V S - - - - - - - - - - - K G V E S T G K V W H K F D - - - - - - - - - - - - - - - - E P I E C F N E S D L G K N L Y S G K T F L S A P - - - - - - L P T W Q L I - - - G R S F V I S K S - L N - - - - - - - - - H P E N E P V K - - - - - - - - - - - - D Y S F L G V I A - - - - - - - - - - - -
- - - Q S L T S T L T A - - - - - P D - - - - G T K V A T A K F E F A N - - G Y A T V T I A T T G V G K L T P - - - - G F H G L H I H Q V G K C E P N S V A P T G G A P G N F L S A G G H Y H V P G H T G - - - - - - T P A S G D L A S L Q V R G - - - - - - - D G S A M L V T T T D A F T - - - - - M D D L L S G A K T A I I I H A G A D N F A N I P P E R Y V Q V N G T P G P D E T T L T T G D A G K R V A C G V I G S - - - - - - - - - - G
- - A F G H H V Q L V N - - - - - R E - - - - G K A V G F I E I K E S D - D E G L D I H I S A N - - - S L R P - - - G A S L G F H I H E K G S C V R P - - - - - - - - - - D F E S A G G H F N P L N K E H G F N N P M G H H A G D L P N L E V G A - - - - - - - D G K V D V I M N A P D T S L K K G S K L N I L D E D G S A F I I H E Q A D D Y L - - - - - - - - - - - - - - - - - - - T N P S G N S G A R I V C G A L L - - - - - - - - - - - G
- - - E S T T V K M Y E A L - - - P T G P - - G K E V G T V V I S E A P - - G G L H F K V N M E - - - K L T P - - - - G Y H G F H V H E N P S C A P - G E K D G - - K I V P A L A A G G H Y D P G N T H H H L G P E G D G H M G D L P R L S A N A - - - - - - - D G K V S E T V V A P H L K - - - - K L A E I K - - - Q R S L M V H V G G D N Y S D K - - - - - - - - - - - - - - - - - P E P L G G G G A R F A C G V I E - - - - - - - - - - - -
D G T L H A A C Q V Q P S A - - - T L D A A Q P R V T G V V L F R Q L A P R A K L D A F F A L E - - - G F P T E P N S S S R A I H V H Q F G D L S - - - - - - - - - - - Q G C E S T G P H Y N P L A V P H P - - - - - - Q H P G D F G N F A V R - - - - - - - - D G S L W R Y R A G L A A S L A G - - P H S I V - - - G R A V V V H A G E D D L G R G G - - - - - - - - - - - - - N Q A S V E N G N A G R R L A C C V V G V C G P G L W E R Q A R
- - A I H A V C V L K G - - - - - - - - - D S P - V T G T I H L K E E G D - - M V T V T G E I T - - - G L T - - - - P G K H G F H V H E F G D N T - - - - - - - - - - - N G C T S A G G H F N P H G K E H G A P E D E N R H A G D L G N V V A G E - - - - - - - D G K A V I N M K D K L V K L T G - - P D S V I - - - G R T L V V H V D E D D L G R G G - - - - - - - - - - - - - H E Q S K I T G N A G G R L A C G V I G I T K - - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
d1ej8a_ A P40202 GO:0006801
d1ej8a_ A P40202 GO:0046872
d1pzsa_ A P9WGE9 GO:0004784
d1pzsa_ A P9WGE9 GO:0005507
d1pzsa_ A P9WGE9 GO:0005576
d1pzsa_ A P9WGE9 GO:0005886
d1pzsa_ A P9WGE9 GO:0006801
d1pzsa_ A P9WGE9 GO:0006979
d1pzsa_ A P9WGE9 GO:0009274
d1pzsa_ A P9WGE9 GO:0016209
d1pzsa_ A P9WGE9 GO:0016491
d1pzsa_ A P9WGE9 GO:0019430
d1pzsa_ A P9WGE9 GO:0033194
d1pzsa_ A P9WGE9 GO:0045454
d1pzsa_ A P9WGE9 GO:0046872
d1pzsa_ A P9WGE9 GO:0075136
d1pzsa_ A P9WGE9 GO:0141082
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in