PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1akpa-  (   1 )    asaavsvspatgladgatvtvsasgfatStsatAlqçAiladgrgAçnva
d2cboa-  (   1 )    aaptAtVtpssgLsdgtvVkVaGagLqagtaYwVaQwArvdtgvwAyNpa
                       bbbbb         bbbbbbb          bbbb       bb 33

                             60        70        80        90        100 
d1akpa-  (  51 )    efhdfsls-ggegttsvvvrrsftgyvmpdgpevgavdçdtapggÇeivv
d2cboa-  (  51 )    dnssvtAdanGsastsLtVrrsfeGflf-dgtrwgtVdÇtta--aÇqVgL
                    3           bbbbbb   bbb           bbb        bbb 

                             110      
d1akpa-  ( 100 )    ggntgeygn-aaisfg  
d2cboa-  (  98 )    sdaagngPegvaIsFnhh

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1akpa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1akpa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Kedarcidin	Actinoxanthin-like	Actinomycete ATCC 53650, strain L585-6 [TaxId: 38989]		view
d2cboa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2cboa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Actinoxanthin-like	Streptomyces carzinostaticus [TaxId: 1897]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
A	S	A	A	V	S	V	S	P	A	T	G	L	A	D	G	A	T	V	T	V	S	A	S	G	F	A	T	S	T	S	A	T	A	L	Q	C	A	I	L	A	D	G	R	G	A	C	N	V	A	E	F	H	D	F	S	L	S	-	G	G	E	G	T	T	S	V	V	V	R	R	S	F	T	G	Y	V	M	P	D	G	P	E	V	G	A	V	D	C	D	T	A	P	G	G	C	E	I	V	V	G	G	N	T	G	E	Y	G	N	-	A	A	I	S	F	G	-	-
A	A	P	T	A	T	V	T	P	S	S	G	L	S	D	G	T	V	V	K	V	A	G	A	G	L	Q	A	G	T	A	Y	W	V	A	Q	W	A	R	V	D	T	G	V	W	A	Y	N	P	A	D	N	S	S	V	T	A	D	A	N	G	S	A	S	T	S	L	T	V	R	R	S	F	E	G	F	L	F	-	D	G	T	R	W	G	T	V	D	C	T	T	A	-	-	A	C	Q	V	G	L	S	D	A	A	G	N	G	P	E	G	V	A	I	S	F	N	H	H

Member	Chain	UniProtKB	GO term
d1akpa_	A	P41249	GO:0003677
d1akpa_	A	P41249	GO:0006952
d1akpa_	A	P41249	GO:0042742

									10										20										30										40										50										60										70										80										90										100										110
A	S	A	A	V	S	V	S	P	A	T	G	L	A	D	G	A	T	V	T	V	S	A	S	G	F	A	T	S	T	S	A	T	A	L	Q	C	A	I	L	A	D	G	R	G	A	C	N	V	A	E	F	H	D	F	S	L	S	-	G	G	E	G	T	T	S	V	V	V	R	R	S	F	T	G	Y	V	M	P	D	G	P	E	V	G	A	V	D	C	D	T	A	P	G	G	C	E	I	V	V	G	G	N	T	G	E	Y	G	N	-	A	A	I	S	F	G	-	-
A	A	P	T	A	T	V	T	P	S	S	G	L	S	D	G	T	V	V	K	V	A	G	A	G	L	Q	A	G	T	A	Y	W	V	A	Q	W	A	R	V	D	T	G	V	W	A	Y	N	P	A	D	N	S	S	V	T	A	D	A	N	G	S	A	S	T	S	L	T	V	R	R	S	F	E	G	F	L	F	-	D	G	T	R	W	G	T	V	D	C	T	T	A	-	-	A	C	Q	V	G	L	S	D	A	A	G	N	G	P	E	G	V	A	I	S	F	N	H	H

									10										20										30										40										50										60										70										80										90										100										110
A	S	A	A	V	S	V	S	P	A	T	G	L	A	D	G	A	T	V	T	V	S	A	S	G	F	A	T	S	T	S	A	T	A	L	Q	C	A	I	L	A	D	G	R	G	A	C	N	V	A	E	F	H	D	F	S	L	S	-	G	G	E	G	T	T	S	V	V	V	R	R	S	F	T	G	Y	V	M	P	D	G	P	E	V	G	A	V	D	C	D	T	A	P	G	G	C	E	I	V	V	G	G	N	T	G	E	Y	G	N	-	A	A	I	S	F	G	-	-
A	A	P	T	A	T	V	T	P	S	S	G	L	S	D	G	T	V	V	K	V	A	G	A	G	L	Q	A	G	T	A	Y	W	V	A	Q	W	A	R	V	D	T	G	V	W	A	Y	N	P	A	D	N	S	S	V	T	A	D	A	N	G	S	A	S	T	S	L	T	V	R	R	S	F	E	G	F	L	F	-	D	G	T	R	W	G	T	V	D	C	T	T	A	-	-	A	C	Q	V	G	L	S	D	A	A	G	N	G	P	E	G	V	A	I	S	F	N	H	H

									10										20										30										40										50										60										70										80										90										100										110
A	S	A	A	V	S	V	S	P	A	T	G	L	A	D	G	A	T	V	T	V	S	A	S	G	F	A	T	S	T	S	A	T	A	L	Q	C	A	I	L	A	D	G	R	G	A	C	N	V	A	E	F	H	D	F	S	L	S	-	G	G	E	G	T	T	S	V	V	V	R	R	S	F	T	G	Y	V	M	P	D	G	P	E	V	G	A	V	D	C	D	T	A	P	G	G	C	E	I	V	V	G	G	N	T	G	E	Y	G	N	-	A	A	I	S	F	G	-	-
A	A	P	T	A	T	V	T	P	S	S	G	L	S	D	G	T	V	V	K	V	A	G	A	G	L	Q	A	G	T	A	Y	W	V	A	Q	W	A	R	V	D	T	G	V	W	A	Y	N	P	A	D	N	S	S	V	T	A	D	A	N	G	S	A	S	T	S	L	T	V	R	R	S	F	E	G	F	L	F	-	D	G	T	R	W	G	T	V	D	C	T	T	A	-	-	A	C	Q	V	G	L	S	D	A	A	G	N	G	P	E	G	V	A	I	S	F	N	H	H