PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1g4ia-  (   1 )                   alwQfngMIkÇkip---------------------
d1lwba-  (   1 )    apadkpqvlasFtqtsassqnaWlaAnrnqsawaayeFdwstdlçtqapd
d1poca-  (   1 )                                                      
d2g58a-  (   1 )                   sllefgkMIleeTg---------------------
d5owca-  (   1 )                   GilElagTVgçvgp---------------------
                                    aaaaaaaaaaa                       

                             60        70        80        90        100 
d1g4ia-  (  15 )    -----ssePlldfnnYGÇyÇglgGs------gtpvddLDrÇçqthdnçyk
d1lwba-  (  51 )    npfgFpFntAÇARhdFGyrnykaag------sfdanksriDsAFyeDMkr
d1poca-  (   1 )               iiypgTlWÇghgnkSsgpnelgrfkhTDaÇÇrthdmÇp-
d2g58a-  (  16 )    ------klaipsYssYGÇYÇgwggk------GtPkdaTDrÇçfvhdççyg
d5owca-  (  15 )    ------rtpi-aymkYGÇFÇglggh------GqPrdaIDwÇÇhghdÇÇyt
                                                        aaaaaaaaaaaaaa

                             110       120       130       140       150 
d1g4ia-  (  54 )    qAkkldsÇkvlvdnPytnnYsysçsnneItçss-------eNnaÇeafIÇ
d1lwba-  (  95 )    vÇtgytg-----------------------------------ekntaÇns
d1poca-  (  39 )    ----------------dvMsageskhgltNtashtrLsçdçDdkFydçLk
d2g58a-  (  54 )    nLp--------dÇnpksdrYkykrvngaIvÇek--------gtsçenrIÇ
d5owca-  (  52 )    rAeea------gÇsPkterYswqçvnqsVlçgp-------aenkçqelLÇ
                                           bb  bb              aaaaaaa

                             160       170       180       190       200 
d1g4ia-  (  97 )    -----nÇDrnAAiçFskv--pyn-----------kehknldkknç     
d1lwba-  ( 110 )    -----tAwtYyqavkifg                                
d1poca-  (  73 )    nsadtiSSyfvGkmyFnlidTkÇYklehpvtgçgertegrçlhytvdksk
d2g58a-  (  97 )    -----eÇDkaAAiçFrqnlntYs-----------kkymlypdflÇk----
d5owca-  (  89 )    -----kÇDqeiAnçLaqt--eyn-----------lkylfypqflÇep---
                         aaaaaaaaaaa                                  

                             210 
d1g4ia-                         
d1lwba-                         
d1poca-  ( 123 )    pkvyqwfdlrky
d2g58a-  ( 128 )    -------gelkç
d5owca-  ( 118 )    -------dspkç

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1g4ia- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1g4ia- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Phospholipase A2	Vertebrate phospholipase A2	Cow (Bos taurus), pancreas [TaxId: 9913]	view
d1lwba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1lwba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Prokaryotic phospholipase A2	Prokaryotic phospholipase A2	Streptomyces violaceoruber [TaxId: 1935]	view
d1poca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1poca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Phospholipase A2	Insect phospholipase A2	Honeybee (Apis mellifera) [TaxId: 7460]	view
d2g58a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2g58a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Vertebrate phospholipase A2	Daboia russellii [TaxId: 97228]	view
d5owca- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5owca- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Phospholipase A2	Vertebrate phospholipase A2	Human (Homo sapiens), SPLA2 [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	P	A	D	K	P	Q	V	L	A	S	F	T	Q	T	S	A	S	S	Q	N	A	W	L	A	A	N	R	N	Q	S	A	W	A	A	Y	E	F	D	W	S	T	D	L	C	T	Q	A	P	D	N	P	F	G	F	P	F	N	T	A	C	A	R	H	D	F	G	Y	R	N	Y	K	A	A	G	-	-	-	-	-	-	S	F	D	A	N	K	S	R	I	D	S	A	F	Y	E	D	M	K	R	V	C	T	G	Y	T	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	K	N	T	A	C	N	S	-	-	-	-	-	T	A	W	T	Y	Y	Q	A	V	K	I	F	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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Member	Chain	UniProtKB	GO term
d1g4ia_	A	P00593	GO:0002227
d1g4ia_	A	P00593	GO:0004623
d1g4ia_	A	P00593	GO:0005102
d1g4ia_	A	P00593	GO:0005509
d1g4ia_	A	P00593	GO:0005543
d1g4ia_	A	P00593	GO:0005576
d1g4ia_	A	P00593	GO:0005615
d1g4ia_	A	P00593	GO:0006629
d1g4ia_	A	P00593	GO:0006633
d1g4ia_	A	P00593	GO:0006644
d1g4ia_	A	P00593	GO:0008284
d1g4ia_	A	P00593	GO:0009986
d1g4ia_	A	P00593	GO:0016042
d1g4ia_	A	P00593	GO:0016787
d1g4ia_	A	P00593	GO:0019731
d1g4ia_	A	P00593	GO:0032052
d1g4ia_	A	P00593	GO:0046470
d1g4ia_	A	P00593	GO:0046471
d1g4ia_	A	P00593	GO:0046872
d1g4ia_	A	P00593	GO:0047498
d1g4ia_	A	P00593	GO:0048146
d1g4ia_	A	P00593	GO:0050482
d1g4ia_	A	P00593	GO:0050830
d1g4ia_	A	P00593	GO:0061844
d1g4ia_	A	P00593	GO:1904635
d1lwba_	A	Q6UV28	GO:0004623
d1lwba_	A	Q6UV28	GO:0006644
d1lwba_	A	Q6UV28	GO:0046872
d1lwba_	A	Q6UV28	GO:0050482
d1poca_	A	P00630	GO:0004623
d1poca_	A	P00630	GO:0005509
d1poca_	A	P00630	GO:0005576
d1poca_	A	P00630	GO:0006644
d1poca_	A	P00630	GO:0016042
d1poca_	A	P00630	GO:0016787
d1poca_	A	P00630	GO:0046872
d1poca_	A	P00630	GO:0047498
d1poca_	A	P00630	GO:0050482

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	I	L	E	L	A	G	T	V	G	C	V	G	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	T	P	I	-	A	Y	M	K	Y	G	C	F	C	G	L	G	G	H	-	-	-	-	-	-	G	Q	P	R	D	A	I	D	W	C	C	H	G	H	D	C	C	Y	T	R	A	E	E	A	-	-	-	-	-	-	G	C	S	P	K	T	E	R	Y	S	W	Q	C	V	N	Q	S	V	L	C	G	P	-	-	-	-	-	-	-	A	E	N	K	C	Q	E	L	L	C	-	-	-	-	-	K	C	D	Q	E	I	A	N	C	L	A	Q	T	-	-	E	Y	N	-	-	-	-	-	-	-	-	-	-	-	L	K	Y	L	F	Y	P	Q	F	L	C	E	P	-	-	-	-	-	-	-	-	-	-	D	S	P	K	C

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	L	L	E	F	G	K	M	I	L	E	E	T	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	L	A	I	P	S	Y	S	S	Y	G	C	Y	C	G	W	G	G	K	-	-	-	-	-	-	G	T	P	K	D	A	T	D	R	C	C	F	V	H	D	C	C	Y	G	N	L	P	-	-	-	-	-	-	-	-	D	C	N	P	K	S	D	R	Y	K	Y	K	R	V	N	G	A	I	V	C	E	K	-	-	-	-	-	-	-	-	G	T	S	C	E	N	R	I	C	-	-	-	-	-	E	C	D	K	A	A	A	I	C	F	R	Q	N	L	N	T	Y	S	-	-	-	-	-	-	-	-	-	-	-	K	K	Y	M	L	Y	P	D	F	L	C	K	-	-	-	-	-	-	-	-	-	-	-	G	E	L	K	C
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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	L	W	Q	F	N	G	M	I	K	C	K	I	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	S	E	P	L	L	D	F	N	N	Y	G	C	Y	C	G	L	G	G	S	-	-	-	-	-	-	G	T	P	V	D	D	L	D	R	C	C	Q	T	H	D	N	C	Y	K	Q	A	K	K	L	D	S	C	K	V	L	V	D	N	P	Y	T	N	N	Y	S	Y	S	C	S	N	N	E	I	T	C	S	S	-	-	-	-	-	-	-	E	N	N	A	C	E	A	F	I	C	-	-	-	-	-	N	C	D	R	N	A	A	I	C	F	S	K	V	-	-	P	Y	N	-	-	-	-	-	-	-	-	-	-	-	K	E	H	K	N	L	D	K	K	N	C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
A	P	A	D	K	P	Q	V	L	A	S	F	T	Q	T	S	A	S	S	Q	N	A	W	L	A	A	N	R	N	Q	S	A	W	A	A	Y	E	F	D	W	S	T	D	L	C	T	Q	A	P	D	N	P	F	G	F	P	F	N	T	A	C	A	R	H	D	F	G	Y	R	N	Y	K	A	A	G	-	-	-	-	-	-	S	F	D	A	N	K	S	R	I	D	S	A	F	Y	E	D	M	K	R	V	C	T	G	Y	T	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	E	K	N	T	A	C	N	S	-	-	-	-	-	T	A	W	T	Y	Y	Q	A	V	K	I	F	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	S	L	L	E	F	G	K	M	I	L	E	E	T	G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	L	A	I	P	S	Y	S	S	Y	G	C	Y	C	G	W	G	G	K	-	-	-	-	-	-	G	T	P	K	D	A	T	D	R	C	C	F	V	H	D	C	C	Y	G	N	L	P	-	-	-	-	-	-	-	-	D	C	N	P	K	S	D	R	Y	K	Y	K	R	V	N	G	A	I	V	C	E	K	-	-	-	-	-	-	-	-	G	T	S	C	E	N	R	I	C	-	-	-	-	-	E	C	D	K	A	A	A	I	C	F	R	Q	N	L	N	T	Y	S	-	-	-	-	-	-	-	-	-	-	-	K	K	Y	M	L	Y	P	D	F	L	C	K	-	-	-	-	-	-	-	-	-	-	-	G	E	L	K	C
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	I	L	E	L	A	G	T	V	G	C	V	G	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	R	T	P	I	-	A	Y	M	K	Y	G	C	F	C	G	L	G	G	H	-	-	-	-	-	-	G	Q	P	R	D	A	I	D	W	C	C	H	G	H	D	C	C	Y	T	R	A	E	E	A	-	-	-	-	-	-	G	C	S	P	K	T	E	R	Y	S	W	Q	C	V	N	Q	S	V	L	C	G	P	-	-	-	-	-	-	-	A	E	N	K	C	Q	E	L	L	C	-	-	-	-	-	K	C	D	Q	E	I	A	N	C	L	A	Q	T	-	-	E	Y	N	-	-	-	-	-	-	-	-	-	-	-	L	K	Y	L	F	Y	P	Q	F	L	C	E	P	-	-	-	-	-	-	-	-	-	-	D	S	P	K	C