PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d6t0bf-  (  45 )    deetfeeFtarYekeFd--eAydlfeVqrVlnnCfsydlvPapaVIekAL
d7cohe-  (   7 )       tdeefdarwvtyFnkpdI-daweLrkGmntLvgydlvPepkIIdAAL
                        aaaaaaaaaaaa       aaaaaaaaaaa        aaaaaaaa

                             60        70        80        90        100 
d6t0bf-  (  93 )    rAArrvndlptAirVFeaLkykV-enedqykayldeLkdvrqelgVplke
d7cohe-  (  53 )    rACrrlndfasAVrILevVkdkAgphkeiypyViqeLrptLnelgIsTPe
                    aaaaa   aaaaaaaaaaaaaa      aaaaaaaa aaaaaaa      

                          
d6t0bf-  ( 142 )    elf-ps
d7cohe-  ( 103 )    elgldk

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d6t0bf- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6t0bf- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]		view
d7cohe- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7cohe- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cytochrome c oxidase subunit E	Cytochrome c oxidase subunit E	Cow (Bos taurus) [TaxId: 9913]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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D	E	E	T	F	E	E	F	T	A	R	Y	E	K	E	F	D	-	-	E	A	Y	D	L	F	E	V	Q	R	V	L	N	N	C	F	S	Y	D	L	V	P	A	P	A	V	I	E	K	A	L	R	A	A	R	R	V	N	D	L	P	T	A	I	R	V	F	E	A	L	K	Y	K	V	-	E	N	E	D	Q	Y	K	A	Y	L	D	E	L	K	D	V	R	Q	E	L	G	V	P	L	K	E	E	L	F	-	P	S
-	-	-	T	D	E	E	F	D	A	R	W	V	T	Y	F	N	K	P	D	I	-	D	A	W	E	L	R	K	G	M	N	T	L	V	G	Y	D	L	V	P	E	P	K	I	I	D	A	A	L	R	A	C	R	R	L	N	D	F	A	S	A	V	R	I	L	E	V	V	K	D	K	A	G	P	H	K	E	I	Y	P	Y	V	I	Q	E	L	R	P	T	L	N	E	L	G	I	S	T	P	E	E	L	G	L	D	K

Member	Chain	UniProtKB	GO term

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D	E	E	T	F	E	E	F	T	A	R	Y	E	K	E	F	D	-	-	E	A	Y	D	L	F	E	V	Q	R	V	L	N	N	C	F	S	Y	D	L	V	P	A	P	A	V	I	E	K	A	L	R	A	A	R	R	V	N	D	L	P	T	A	I	R	V	F	E	A	L	K	Y	K	V	-	E	N	E	D	Q	Y	K	A	Y	L	D	E	L	K	D	V	R	Q	E	L	G	V	P	L	K	E	E	L	F	-	P	S
-	-	-	T	D	E	E	F	D	A	R	W	V	T	Y	F	N	K	P	D	I	-	D	A	W	E	L	R	K	G	M	N	T	L	V	G	Y	D	L	V	P	E	P	K	I	I	D	A	A	L	R	A	C	R	R	L	N	D	F	A	S	A	V	R	I	L	E	V	V	K	D	K	A	G	P	H	K	E	I	Y	P	Y	V	I	Q	E	L	R	P	T	L	N	E	L	G	I	S	T	P	E	E	L	G	L	D	K

									10										20										30										40										50										60										70										80										90										100
D	E	E	T	F	E	E	F	T	A	R	Y	E	K	E	F	D	-	-	E	A	Y	D	L	F	E	V	Q	R	V	L	N	N	C	F	S	Y	D	L	V	P	A	P	A	V	I	E	K	A	L	R	A	A	R	R	V	N	D	L	P	T	A	I	R	V	F	E	A	L	K	Y	K	V	-	E	N	E	D	Q	Y	K	A	Y	L	D	E	L	K	D	V	R	Q	E	L	G	V	P	L	K	E	E	L	F	-	P	S
-	-	-	T	D	E	E	F	D	A	R	W	V	T	Y	F	N	K	P	D	I	-	D	A	W	E	L	R	K	G	M	N	T	L	V	G	Y	D	L	V	P	E	P	K	I	I	D	A	A	L	R	A	C	R	R	L	N	D	F	A	S	A	V	R	I	L	E	V	V	K	D	K	A	G	P	H	K	E	I	Y	P	Y	V	I	Q	E	L	R	P	T	L	N	E	L	G	I	S	T	P	E	E	L	G	L	D	K

									10										20										30										40										50										60										70										80										90										100
D	E	E	T	F	E	E	F	T	A	R	Y	E	K	E	F	D	-	-	E	A	Y	D	L	F	E	V	Q	R	V	L	N	N	C	F	S	Y	D	L	V	P	A	P	A	V	I	E	K	A	L	R	A	A	R	R	V	N	D	L	P	T	A	I	R	V	F	E	A	L	K	Y	K	V	-	E	N	E	D	Q	Y	K	A	Y	L	D	E	L	K	D	V	R	Q	E	L	G	V	P	L	K	E	E	L	F	-	P	S
-	-	-	T	D	E	E	F	D	A	R	W	V	T	Y	F	N	K	P	D	I	-	D	A	W	E	L	R	K	G	M	N	T	L	V	G	Y	D	L	V	P	E	P	K	I	I	D	A	A	L	R	A	C	R	R	L	N	D	F	A	S	A	V	R	I	L	E	V	V	K	D	K	A	G	P	H	K	E	I	Y	P	Y	V	I	Q	E	L	R	P	T	L	N	E	L	G	I	S	T	P	E	E	L	G	L	D	K