PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1f5na1  ( 284 )    ggiqvngprleslvltyvnaissgdlpcmenAvlalAqieNsaAVqkAia
d6vkja2  ( 282 )    ggipvngprleslvltyvnaissgdlpc                      
                          aaaaaaaaaaaaaaaa                            

                             60        70        80        90        100 
d1f5na1  ( 334 )    hYeqqMgqkVqlpTesLqeLLdlHrdSEreAIevFirsSfkdvdhlfQke
d6vkja2                                                               
                                                                      

                             110       120       130       140       150 
d1f5na1  ( 384 )    LaaqLekkrddfckqNqeaSsdrCsgllqvIFspLeeevkagiyskpggY
d6vkja2                                                               
                                                                      

                             160       170       180       190       200 
d1f5na1  ( 434 )    rlFvqklqdlkkkYyeeprkGiqaeeiLqtylkskesmtdaILqtDqtlt
d6vkja2                                                               
                                                                      

                             210       220       230       240       250 
d1f5na1  ( 484 )    ekekeievervkaesaqasakmlhemqrkneqmmeqkersyqehlkqlte
d6vkja2                                                               
                                                                      

                             260       270       280       290       300 
d1f5na1  ( 534 )    kmendrvqllkeqertlalklqeqeqllkegfqkeSrimkneiqdlqtkm
d6vkja2

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1f5na1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1f5na1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	Human (Homo sapiens) [TaxId: 9606]		view
d6vkja2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6vkja2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1f5na1	A	P32455	GO:0000139
d1f5na1	A	P32455	GO:0001530
d1f5na1	A	P32455	GO:0003779
d1f5na1	A	P32455	GO:0003924
d1f5na1	A	P32455	GO:0003925
d1f5na1	A	P32455	GO:0004382
d1f5na1	A	P32455	GO:0005515
d1f5na1	A	P32455	GO:0005525
d1f5na1	A	P32455	GO:0005576
d1f5na1	A	P32455	GO:0005737
d1f5na1	A	P32455	GO:0005794
d1f5na1	A	P32455	GO:0005829
d1f5na1	A	P32455	GO:0005886
d1f5na1	A	P32455	GO:0012506
d1f5na1	A	P32455	GO:0015629
d1f5na1	A	P32455	GO:0016787
d1f5na1	A	P32455	GO:0019003
d1f5na1	A	P32455	GO:0019899
d1f5na1	A	P32455	GO:0019955
d1f5na1	A	P32455	GO:0030507
d1f5na1	A	P32455	GO:0030659
d1f5na1	A	P32455	GO:0031410
d1f5na1	A	P32455	GO:0032703
d1f5na1	A	P32455	GO:0042742
d1f5na1	A	P32455	GO:0042802
d1f5na1	A	P32455	GO:0042803
d1f5na1	A	P32455	GO:0042832
d1f5na1	A	P32455	GO:0045087
d1f5na1	A	P32455	GO:0050848
d1f5na1	A	P32455	GO:0050860
d1f5na1	A	P32455	GO:0051607
d1f5na1	A	P32455	GO:0051715
d1f5na1	A	P32455	GO:0051879
d1f5na1	A	P32455	GO:0070373
d1f5na1	A	P32455	GO:0071346
d1f5na1	A	P32455	GO:0071347
d1f5na1	A	P32455	GO:0071356
d1f5na1	A	P32455	GO:0072665
d1f5na1	A	P32455	GO:0106139
d1f5na1	A	P32455	GO:0140639
d1f5na1	A	P32455	GO:0160075
d1f5na1	A	P32455	GO:1900025
d1f5na1	A	P32455	GO:1903076
d1f5na1	A	P32455	GO:1903077

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