PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1aora1  ( 211 )    iadkqkfmlvvreKvnkLrndpvAgggLpkyGtAvlVniInenGLYPVkN
d1b25a1  ( 211 )      dkeelkkLsqeayneIlnspg-ypfWkrQGtMaAVewCntnyALPTrN
                       aaaaaaaaaaaaaaaaa    a aaaaa 333aaaaaaa        

                             60        70        80        90        100 
d1aora1  ( 261 )    FqtGvYpyAyeQSGeaMaakylvrnkpcyacpIgcgRVNrLptvgetegP
d1b25a1  ( 258 )    FsdGyFefArsIDGytMeg-mkvqqrgcpycnMpcgNVVlDaegqeSeL-
                            3333 aaaaaa  bbbbb         bbbbb     bbb  

                             110       120       130       140       150 
d1aora1  ( 311 )    eYesVWALGANLGIndLaSIIeANhmCdelgldtistGgTLATAMELyek
d1b25a1  ( 306 )    dYenVALLGSNLGIgkLneVSVLNriAdemgmdtisLGVSIAHVMeAver
                     aaaaaaa 333    aaaaaaaaaaaaaa   aaaaaaaaaaaaaaaa 

                             160       170       180       190       200 
d1aora1  ( 361 )    ghIkdeeLgdaPpFrwgnteVLhyYIekiakreg-fGdkLaegSyrLAes
d1b25a1  ( 356 )    gilk-------egPtfgdfkgAkqLAldiayrkgelGnlAaegVkaMAek
                                       aaaaaaaaaaa      aaaa   aaaaaaa

                             210       220       230       240       250 
d1aora1  ( 410 )    yghpelSMTVkklELPAYDPRGAEGHGLGYATNnrGGChikNyMISPEIl
d1b25a1  ( 399 )    lgThdFAMhVKglEVSGYNCYIYPAMALAYGTSaiGAhhkEAwVIawEIg
                       333  bb  bb         aaaaaaaaa            aaaa  

                             260       270       280       290       300 
d1aora1  ( 460 )    gypykmdphdvsddKIkmLilfQdlT-aLIdsaglclfttf--gLgaddY
d1b25a1  ( 449 )    taPieyk-isydpikAqkVVelQrlRGGLFemltacrlpwveVgLsldyy
                                 aaaaaaaaaaaaa  aaaaa               aa

                             310       320       330       340       350 
d1aora1  ( 507 )    rdllnAalgwdfttedYlkiGeriWNaeRlfnlka--gldPardDtLpkR
d1b25a1  ( 506 )    pkllkAitgvtytwddlykaAdrvYSliRAywVrefnGkWdrkmDyPpkR
                    aaaaaaaa     aaaaaaaaaaaaaaaaaaaaaa              a

                             360       370       380       390       400 
d1aora1  ( 555 )    FleepMpegpnkghtVr---LkeMlprYYklRgWtedGkIpkekLeeLgI
d1b25a1  ( 556 )    WFteGLksgphkgehLdekkYdeLLseYYriRgWDerGIPkketLkeldL
                    aaa                 aaaaaaaaaaaa         aaaaaa   

                             410  
d1aora1  ( 602 )    aefy          
d1b25a1  ( 606 )    dfVipeLekvtnLe

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1aora1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1aora1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Aldehyde ferredoxin oxidoreductase	Aldehyde ferredoxin oxidoreductase, C-terminal domains	Pyrococcus furiosus [TaxId: 2261]		view
d1b25a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1b25a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Formaldehyde ferredoxin oxidoreductase	Aldehyde ferredoxin oxidoreductase, C-terminal domains	Pyrococcus furiosus [TaxId: 2261]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1aora1	A	Q51739	GO:0009055
d1aora1	A	Q51739	GO:0016491
d1aora1	A	Q51739	GO:0016625
d1aora1	A	Q51739	GO:0033726
d1aora1	A	Q51739	GO:0046872
d1aora1	A	Q51739	GO:0051536
d1aora1	A	Q51739	GO:0051539
d1b25a1	A	Q8U1K3	GO:0009055
d1b25a1	A	Q8U1K3	GO:0016491
d1b25a1	A	Q8U1K3	GO:0016625
d1b25a1	A	Q8U1K3	GO:0033726
d1b25a1	A	Q8U1K3	GO:0046872
d1b25a1	A	Q8U1K3	GO:0051536
d1b25a1	A	Q8U1K3	GO:0051539

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-	-	D	K	E	E	L	K	K	L	S	Q	E	A	Y	N	E	I	L	N	S	P	G	-	Y	P	F	W	K	R	Q	G	T	M	A	A	V	E	W	C	N	T	N	Y	A	L	P	T	R	N	F	S	D	G	Y	F	E	F	A	R	S	I	D	G	Y	T	M	E	G	-	M	K	V	Q	Q	R	G	C	P	Y	C	N	M	P	C	G	N	V	V	L	D	A	E	G	Q	E	S	E	L	-	D	Y	E	N	V	A	L	L	G	S	N	L	G	I	G	K	L	N	E	V	S	V	L	N	R	I	A	D	E	M	G	M	D	T	I	S	L	G	V	S	I	A	H	V	M	E	A	V	E	R	G	I	L	K	-	-	-	-	-	-	-	E	G	P	T	F	G	D	F	K	G	A	K	Q	L	A	L	D	I	A	Y	R	K	G	E	L	G	N	L	A	A	E	G	V	K	A	M	A	E	K	L	G	T	H	D	F	A	M	H	V	K	G	L	E	V	S	G	Y	N	C	Y	I	Y	P	A	M	A	L	A	Y	G	T	S	A	I	G	A	H	H	K	E	A	W	V	I	A	W	E	I	G	T	A	P	I	E	Y	K	-	I	S	Y	D	P	I	K	A	Q	K	V	V	E	L	Q	R	L	R	G	G	L	F	E	M	L	T	A	C	R	L	P	W	V	E	V	G	L	S	L	D	Y	Y	P	K	L	L	K	A	I	T	G	V	T	Y	T	W	D	D	L	Y	K	A	A	D	R	V	Y	S	L	I	R	A	Y	W	V	R	E	F	N	G	K	W	D	R	K	M	D	Y	P	P	K	R	W	F	T	E	G	L	K	S	G	P	H	K	G	E	H	L	D	E	K	K	Y	D	E	L	L	S	E	Y	Y	R	I	R	G	W	D	E	R	G	I	P	K	K	E	T	L	K	E	L	D	L	D	F	V	I	P	E	L	E	K	V	T	N	L	E

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I	A	D	K	Q	K	F	M	L	V	V	R	E	K	V	N	K	L	R	N	D	P	V	A	G	G	G	L	P	K	Y	G	T	A	V	L	V	N	I	I	N	E	N	G	L	Y	P	V	K	N	F	Q	T	G	V	Y	P	Y	A	Y	E	Q	S	G	E	A	M	A	A	K	Y	L	V	R	N	K	P	C	Y	A	C	P	I	G	C	G	R	V	N	R	L	P	T	V	G	E	T	E	G	P	E	Y	E	S	V	W	A	L	G	A	N	L	G	I	N	D	L	A	S	I	I	E	A	N	H	M	C	D	E	L	G	L	D	T	I	S	T	G	G	T	L	A	T	A	M	E	L	Y	E	K	G	H	I	K	D	E	E	L	G	D	A	P	P	F	R	W	G	N	T	E	V	L	H	Y	Y	I	E	K	I	A	K	R	E	G	-	F	G	D	K	L	A	E	G	S	Y	R	L	A	E	S	Y	G	H	P	E	L	S	M	T	V	K	K	L	E	L	P	A	Y	D	P	R	G	A	E	G	H	G	L	G	Y	A	T	N	N	R	G	G	C	H	I	K	N	Y	M	I	S	P	E	I	L	G	Y	P	Y	K	M	D	P	H	D	V	S	D	D	K	I	K	M	L	I	L	F	Q	D	L	T	-	A	L	I	D	S	A	G	L	C	L	F	T	T	F	-	-	G	L	G	A	D	D	Y	R	D	L	L	N	A	A	L	G	W	D	F	T	T	E	D	Y	L	K	I	G	E	R	I	W	N	A	E	R	L	F	N	L	K	A	-	-	G	L	D	P	A	R	D	D	T	L	P	K	R	F	L	E	E	P	M	P	E	G	P	N	K	G	H	T	V	R	-	-	-	L	K	E	M	L	P	R	Y	Y	K	L	R	G	W	T	E	D	G	K	I	P	K	E	K	L	E	E	L	G	I	A	E	F	Y	-	-	-	-	-	-	-	-	-	-
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