PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1rqta-  (   1 )    sitkdqiieavaamsvmdvvelisameekfgvsaaaa
d1zavu1  (   1 )     mtideiieaiekltvselaelvkkledkfg      
                       aaaaaaaa    aaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1rqta- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1rqta- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Escherichia coli [TaxId: 562]		view
d1zavu1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zavu1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	Thermotoga maritima [TaxId: 2336]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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S	I	T	K	D	Q	I	I	E	A	V	A	A	M	S	V	M	D	V	V	E	L	I	S	A	M	E	E	K	F	G	V	S	A	A	A	A
-	M	T	I	D	E	I	I	E	A	I	E	K	L	T	V	S	E	L	A	E	L	V	K	K	L	E	D	K	F	G	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1rqta_	A	P0A7K2	GO:0003735
d1rqta_	A	P0A7K2	GO:0005840
d1rqta_	A	P0A7K2	GO:0006412
d1zavu1	U	P29394	GO:0003735
d1zavu1	U	P29394	GO:0005840
d1zavu1	U	P29394	GO:0006412
d1zavu1	U	P29396	GO:0003735
d1zavu1	U	P29396	GO:0005840
d1zavu1	U	P29396	GO:0006412

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S	I	T	K	D	Q	I	I	E	A	V	A	A	M	S	V	M	D	V	V	E	L	I	S	A	M	E	E	K	F	G	V	S	A	A	A	A
-	M	T	I	D	E	I	I	E	A	I	E	K	L	T	V	S	E	L	A	E	L	V	K	K	L	E	D	K	F	G	-	-	-	-	-	-

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S	I	T	K	D	Q	I	I	E	A	V	A	A	M	S	V	M	D	V	V	E	L	I	S	A	M	E	E	K	F	G	V	S	A	A	A	A
-	M	T	I	D	E	I	I	E	A	I	E	K	L	T	V	S	E	L	A	E	L	V	K	K	L	E	D	K	F	G	-	-	-	-	-	-

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S	I	T	K	D	Q	I	I	E	A	V	A	A	M	S	V	M	D	V	V	E	L	I	S	A	M	E	E	K	F	G	V	S	A	A	A	A
-	M	T	I	D	E	I	I	E	A	I	E	K	L	T	V	S	E	L	A	E	L	V	K	K	L	E	D	K	F	G	-	-	-	-	-	-