PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1peqa1  (  13 )                                                      
d2x1ya1  (   4 )    nllvtkrdgsterinldkihrvLdwAaeglhnVsisqVelrShiqFydgI
                                                                      

                             60        70        80        90        100 
d1peqa1  (  13 )          tmdyhalnamlnlydkaghiqfdkdqqAIdAFfathVrphsv--
d2x1ya1  (  54 )    ktsdIhetiikAAadlis---r---dapdYqyLAArLaIfhLRkkAygqf
                             aaaaaa              aaaaaaaaaaaa aaaa    

                             110       120       130       140       150 
d1peqa1  (  55 )    tfasqherLgtLvregYYddavLarYdrafVlrLFehA-hasgfrfqtFl
d2x1ya1  (  98 )    ePpaLydHVvkMvemgkYdnhLledYteeeFkqMdtfIdhdrDmtF-sya
                        aaaaaaaaaa      aaa    aaaaaaaaaa           aa

                             160       170       180       190       200 
d1peqa1  ( 104 )    gAwkFYtsyTlktfdgkrYLEhfeDRVTMVALtlAqgd-----etlAtql
d2x1ya1  ( 147 )    aVkqLegkyLvqnrvtgeIyEsAQFLYILVAAClfsnypretRlqyVkrf
                    aaaaaaaa              aaaaaaaaaaaa         aaaaaaa

                             210       220    
d1peqa1  ( 149 )    TdeMLsgrfqpatptFlncGkqqrge
d2x1ya1  ( 197 )    YdaVStfkislptpiMsgvRtptr-q
                    aaaaa       aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1peqa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1peqa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	R1 subunit of ribonucleotide reductase, N-terminal domain	R1 subunit of ribonucleotide reductase, N-terminal domain	Salmonella typhimurium [TaxId: 90371]		view
d2x1ya1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2x1ya1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	R1 subunit of ribonucleotide reductase, N-terminal domain	R1 subunit of ribonucleotide reductase, N-terminal domain	Escherichia coli [TaxId: 562]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1peqa1	A	Q08698	GO:0004748
d1peqa1	A	Q08698	GO:0005524
d1peqa1	A	Q08698	GO:0005971
d1peqa1	A	Q08698	GO:0009263
d1peqa1	A	Q08698	GO:0016491
d1peqa1	A	Q08698	GO:0004748
d1peqa1	A	Q08698	GO:0005524
d1peqa1	A	Q08698	GO:0005971
d1peqa1	A	Q08698	GO:0009263
d1peqa1	A	Q08698	GO:0016491
d1peqa1	A	Q08698	GO:0004748
d1peqa1	A	Q08698	GO:0005524
d1peqa1	A	Q08698	GO:0005971
d1peqa1	A	Q08698	GO:0009263
d1peqa1	A	Q08698	GO:0016491

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