PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d5a0ya2  ( 270 )    rargenepggvpFGyLADiCQSsrvnyedpVrVSLDVVAtGAmlYDqiwL
d7b1sb2  ( 213 )    gf----amRnimANhIVaATrk----------rtlEAVAlSStlE-aiGH
                           33   aaaaaaa              aaaaaaaaaaaa     

                             60        70        80        90        100 
d5a0ya2  ( 321 )    Gsymsgg----vgftqyAtaAy--tdnILddFTyfGkeyVedkyglceAp
d7b1sb2  ( 248 )    vemgdaigrwrrWQalVhaCQGlnannVVydLvkeAgh------------
                                  aaaaa        aaaaaaaaa              

                             110       120       130       140       150 
d5a0ya2  ( 365 )    nnmdTVldVAteVTfyGLeqYeey------------------palledqf
d7b1sb2  ( 286 )    -------gctgdVvaATvgrAledgiIsvkktlpsgykfytand---psm
                             aaaaaaaaaaaaaa                        a  

                             160       170       180       190       200 
d5a0ya2  ( 397 )    ggSRAAVVAAAAGCSTAFATgnAqTGLsGWYlSMylHkeqhs-rLGfyYd
d7b1sb2  ( 326 )    WNAYVCAGLVAAViVnQgaaraaqgVSsTLlyFNdlIeheTglpHAgygd
                        aaaaaaaaaaaaaaaa     aaaaaaaaaaaaaaaa         

                             210       220       230       240       250 
d5a0ya2  ( 448 )    lQqGasnVfs--irgdeGlpLelRgPnYpnYamnVG-HQGEYAGISQAPh
d7b1sb2  ( 376 )    GmgNGvsFsffShaiygGgspGiFsGnhivTrhSkGFAIPVIAAAVSlds
                        aaaa            333               aaaaaaaaaa  

                             260       270       280       290       300 
d5a0ya2  ( 497 )    aArg----dafVfnplvkiafaddnlvfdftnVrgefakgalrefepage
d7b1sb2  ( 426 )    ---gtavygpeatSglvgdifGe--vd-lirrPmeaiasaaae-------
                                  aaaaaa            aaaaaaaaa         

                           
d5a0ya2  ( 543 )    ralitpa
d7b1sb2  ( 463 )    ikdkf  
                     333

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d5a0ya2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5a0ya2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Methyl-coenzyme M reductase alpha and beta chain C-terminal domain	Methanothermobacter marburgensis [TaxId: 145263]		view
d7b1sb2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d7b1sb2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Candidatus ethanoperedens [TaxId: 2766897]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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G	F	-	-	-	-	A	M	R	N	I	M	A	N	H	I	V	A	A	T	R	K	-	-	-	-	-	-	-	-	-	-	R	T	L	E	A	V	A	L	S	S	T	L	E	-	A	I	G	H	V	E	M	G	D	A	I	G	R	W	R	R	W	Q	A	L	V	H	A	C	Q	G	L	N	A	N	N	V	V	Y	D	L	V	K	E	A	G	H	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	C	T	G	D	V	V	A	A	T	V	G	R	A	L	E	D	G	I	I	S	V	K	K	T	L	P	S	G	Y	K	F	Y	T	A	N	D	-	-	-	P	S	M	W	N	A	Y	V	C	A	G	L	V	A	A	V	I	V	N	Q	G	A	A	R	A	A	Q	G	V	S	S	T	L	L	Y	F	N	D	L	I	E	H	E	T	G	L	P	H	A	G	Y	G	D	G	M	G	N	G	V	S	F	S	F	F	S	H	A	I	Y	G	G	G	S	P	G	I	F	S	G	N	H	I	V	T	R	H	S	K	G	F	A	I	P	V	I	A	A	A	V	S	L	D	S	-	-	-	G	T	A	V	Y	G	P	E	A	T	S	G	L	V	G	D	I	F	G	E	-	-	V	D	-	L	I	R	R	P	M	E	A	I	A	S	A	A	A	E	-	-	-	-	-	-	-	I	K	D	K	F	-	-

Member	Chain	UniProtKB	GO term

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R	A	R	G	E	N	E	P	G	G	V	P	F	G	Y	L	A	D	I	C	Q	S	S	R	V	N	Y	E	D	P	V	R	V	S	L	D	V	V	A	T	G	A	M	L	Y	D	Q	I	W	L	G	S	Y	M	S	G	G	-	-	-	-	V	G	F	T	Q	Y	A	T	A	A	Y	-	-	T	D	N	I	L	D	D	F	T	Y	F	G	K	E	Y	V	E	D	K	Y	G	L	C	E	A	P	N	N	M	D	T	V	L	D	V	A	T	E	V	T	F	Y	G	L	E	Q	Y	E	E	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	A	L	L	E	D	Q	F	G	G	S	R	A	A	V	V	A	A	A	A	G	C	S	T	A	F	A	T	G	N	A	Q	T	G	L	S	G	W	Y	L	S	M	Y	L	H	K	E	Q	H	S	-	R	L	G	F	Y	Y	D	L	Q	Q	G	A	S	N	V	F	S	-	-	I	R	G	D	E	G	L	P	L	E	L	R	G	P	N	Y	P	N	Y	A	M	N	V	G	-	H	Q	G	E	Y	A	G	I	S	Q	A	P	H	A	A	R	G	-	-	-	-	D	A	F	V	F	N	P	L	V	K	I	A	F	A	D	D	N	L	V	F	D	F	T	N	V	R	G	E	F	A	K	G	A	L	R	E	F	E	P	A	G	E	R	A	L	I	T	P	A
G	F	-	-	-	-	A	M	R	N	I	M	A	N	H	I	V	A	A	T	R	K	-	-	-	-	-	-	-	-	-	-	R	T	L	E	A	V	A	L	S	S	T	L	E	-	A	I	G	H	V	E	M	G	D	A	I	G	R	W	R	R	W	Q	A	L	V	H	A	C	Q	G	L	N	A	N	N	V	V	Y	D	L	V	K	E	A	G	H	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	C	T	G	D	V	V	A	A	T	V	G	R	A	L	E	D	G	I	I	S	V	K	K	T	L	P	S	G	Y	K	F	Y	T	A	N	D	-	-	-	P	S	M	W	N	A	Y	V	C	A	G	L	V	A	A	V	I	V	N	Q	G	A	A	R	A	A	Q	G	V	S	S	T	L	L	Y	F	N	D	L	I	E	H	E	T	G	L	P	H	A	G	Y	G	D	G	M	G	N	G	V	S	F	S	F	F	S	H	A	I	Y	G	G	G	S	P	G	I	F	S	G	N	H	I	V	T	R	H	S	K	G	F	A	I	P	V	I	A	A	A	V	S	L	D	S	-	-	-	G	T	A	V	Y	G	P	E	A	T	S	G	L	V	G	D	I	F	G	E	-	-	V	D	-	L	I	R	R	P	M	E	A	I	A	S	A	A	A	E	-	-	-	-	-	-	-	I	K	D	K	F	-	-

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R	A	R	G	E	N	E	P	G	G	V	P	F	G	Y	L	A	D	I	C	Q	S	S	R	V	N	Y	E	D	P	V	R	V	S	L	D	V	V	A	T	G	A	M	L	Y	D	Q	I	W	L	G	S	Y	M	S	G	G	-	-	-	-	V	G	F	T	Q	Y	A	T	A	A	Y	-	-	T	D	N	I	L	D	D	F	T	Y	F	G	K	E	Y	V	E	D	K	Y	G	L	C	E	A	P	N	N	M	D	T	V	L	D	V	A	T	E	V	T	F	Y	G	L	E	Q	Y	E	E	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	A	L	L	E	D	Q	F	G	G	S	R	A	A	V	V	A	A	A	A	G	C	S	T	A	F	A	T	G	N	A	Q	T	G	L	S	G	W	Y	L	S	M	Y	L	H	K	E	Q	H	S	-	R	L	G	F	Y	Y	D	L	Q	Q	G	A	S	N	V	F	S	-	-	I	R	G	D	E	G	L	P	L	E	L	R	G	P	N	Y	P	N	Y	A	M	N	V	G	-	H	Q	G	E	Y	A	G	I	S	Q	A	P	H	A	A	R	G	-	-	-	-	D	A	F	V	F	N	P	L	V	K	I	A	F	A	D	D	N	L	V	F	D	F	T	N	V	R	G	E	F	A	K	G	A	L	R	E	F	E	P	A	G	E	R	A	L	I	T	P	A
G	F	-	-	-	-	A	M	R	N	I	M	A	N	H	I	V	A	A	T	R	K	-	-	-	-	-	-	-	-	-	-	R	T	L	E	A	V	A	L	S	S	T	L	E	-	A	I	G	H	V	E	M	G	D	A	I	G	R	W	R	R	W	Q	A	L	V	H	A	C	Q	G	L	N	A	N	N	V	V	Y	D	L	V	K	E	A	G	H	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	C	T	G	D	V	V	A	A	T	V	G	R	A	L	E	D	G	I	I	S	V	K	K	T	L	P	S	G	Y	K	F	Y	T	A	N	D	-	-	-	P	S	M	W	N	A	Y	V	C	A	G	L	V	A	A	V	I	V	N	Q	G	A	A	R	A	A	Q	G	V	S	S	T	L	L	Y	F	N	D	L	I	E	H	E	T	G	L	P	H	A	G	Y	G	D	G	M	G	N	G	V	S	F	S	F	F	S	H	A	I	Y	G	G	G	S	P	G	I	F	S	G	N	H	I	V	T	R	H	S	K	G	F	A	I	P	V	I	A	A	A	V	S	L	D	S	-	-	-	G	T	A	V	Y	G	P	E	A	T	S	G	L	V	G	D	I	F	G	E	-	-	V	D	-	L	I	R	R	P	M	E	A	I	A	S	A	A	A	E	-	-	-	-	-	-	-	I	K	D	K	F	-	-

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R	A	R	G	E	N	E	P	G	G	V	P	F	G	Y	L	A	D	I	C	Q	S	S	R	V	N	Y	E	D	P	V	R	V	S	L	D	V	V	A	T	G	A	M	L	Y	D	Q	I	W	L	G	S	Y	M	S	G	G	-	-	-	-	V	G	F	T	Q	Y	A	T	A	A	Y	-	-	T	D	N	I	L	D	D	F	T	Y	F	G	K	E	Y	V	E	D	K	Y	G	L	C	E	A	P	N	N	M	D	T	V	L	D	V	A	T	E	V	T	F	Y	G	L	E	Q	Y	E	E	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	P	A	L	L	E	D	Q	F	G	G	S	R	A	A	V	V	A	A	A	A	G	C	S	T	A	F	A	T	G	N	A	Q	T	G	L	S	G	W	Y	L	S	M	Y	L	H	K	E	Q	H	S	-	R	L	G	F	Y	Y	D	L	Q	Q	G	A	S	N	V	F	S	-	-	I	R	G	D	E	G	L	P	L	E	L	R	G	P	N	Y	P	N	Y	A	M	N	V	G	-	H	Q	G	E	Y	A	G	I	S	Q	A	P	H	A	A	R	G	-	-	-	-	D	A	F	V	F	N	P	L	V	K	I	A	F	A	D	D	N	L	V	F	D	F	T	N	V	R	G	E	F	A	K	G	A	L	R	E	F	E	P	A	G	E	R	A	L	I	T	P	A
G	F	-	-	-	-	A	M	R	N	I	M	A	N	H	I	V	A	A	T	R	K	-	-	-	-	-	-	-	-	-	-	R	T	L	E	A	V	A	L	S	S	T	L	E	-	A	I	G	H	V	E	M	G	D	A	I	G	R	W	R	R	W	Q	A	L	V	H	A	C	Q	G	L	N	A	N	N	V	V	Y	D	L	V	K	E	A	G	H	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	C	T	G	D	V	V	A	A	T	V	G	R	A	L	E	D	G	I	I	S	V	K	K	T	L	P	S	G	Y	K	F	Y	T	A	N	D	-	-	-	P	S	M	W	N	A	Y	V	C	A	G	L	V	A	A	V	I	V	N	Q	G	A	A	R	A	A	Q	G	V	S	S	T	L	L	Y	F	N	D	L	I	E	H	E	T	G	L	P	H	A	G	Y	G	D	G	M	G	N	G	V	S	F	S	F	F	S	H	A	I	Y	G	G	G	S	P	G	I	F	S	G	N	H	I	V	T	R	H	S	K	G	F	A	I	P	V	I	A	A	A	V	S	L	D	S	-	-	-	G	T	A	V	Y	G	P	E	A	T	S	G	L	V	G	D	I	F	G	E	-	-	V	D	-	L	I	R	R	P	M	E	A	I	A	S	A	A	A	E	-	-	-	-	-	-	-	I	K	D	K	F	-	-