PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1qh4a1  (   2 )    pfsnshnllkmkysvddeypdlsvhnNhMAkvLtldlYkkLrdrqTssgf
d4am1a1  (   2 )      AdaaviekLeagfkkLe-aatdCkSlLkkyLtkevFdkLkdkkTslga
                        aaaaaaaa  aaaa         aaaaa  aaaaaaa         

                             60        70        80        90        100 
d1qh4a1  (  52 )    TLddVIqtGvdnpghpfimtvgCvagdeeSyevFkeLFdpViedrhggyk
d4am1a1  (  49 )    tLldVIqsGvenld----sgvGIyapdaeAytlFapLFdpIiedyhvgfk
                      aaaaaaaaa                  aaaa aaaaaaaaaaa     

                     
d1qh4a1  ( 102 )    p
d4am1a1  (  95 )    q

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1qh4a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1qh4a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Creatine kinase, N-domain	Guanido kinase N-terminal domain	Chicken (Gallus gallus), brain-type [TaxId: 9031]		view
d4am1a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4am1a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Pacific white shrimp (Litopenaeus vannamei) [TaxId: 6689]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	F	S	N	S	H	N	L	L	K	M	K	Y	S	V	D	D	E	Y	P	D	L	S	V	H	N	N	H	M	A	K	V	L	T	L	D	L	Y	K	K	L	R	D	R	Q	T	S	S	G	F	T	L	D	D	V	I	Q	T	G	V	D	N	P	G	H	P	F	I	M	T	V	G	C	V	A	G	D	E	E	S	Y	E	V	F	K	E	L	F	D	P	V	I	E	D	R	H	G	G	Y	K	P
-	-	A	D	A	A	V	I	E	K	L	E	A	G	F	K	K	L	E	-	A	A	T	D	C	K	S	L	L	K	K	Y	L	T	K	E	V	F	D	K	L	K	D	K	K	T	S	L	G	A	T	L	L	D	V	I	Q	S	G	V	E	N	L	D	-	-	-	-	S	G	V	G	I	Y	A	P	D	A	E	A	Y	T	L	F	A	P	L	F	D	P	I	I	E	D	Y	H	V	G	F	K	Q

Member	Chain	UniProtKB	GO term
d1qh4a1	A	P05122	GO:0003824
d1qh4a1	A	P05122	GO:0004111
d1qh4a1	A	P05122	GO:0005524
d1qh4a1	A	P05122	GO:0005615
d1qh4a1	A	P05122	GO:0005737
d1qh4a1	A	P05122	GO:0005739
d1qh4a1	A	P05122	GO:0005829
d1qh4a1	A	P05122	GO:0005886
d1qh4a1	A	P05122	GO:0006754
d1qh4a1	A	P05122	GO:0016301
d1qh4a1	A	P05122	GO:0016310
d1qh4a1	A	P05122	GO:0016772
d1qh4a1	A	P05122	GO:0046314
d1qh4a1	A	P05122	GO:0065010
d1qh4a1	A	P05122	GO:0003824
d1qh4a1	A	P05122	GO:0004111
d1qh4a1	A	P05122	GO:0005524
d1qh4a1	A	P05122	GO:0005615
d1qh4a1	A	P05122	GO:0005737
d1qh4a1	A	P05122	GO:0005739
d1qh4a1	A	P05122	GO:0005829
d1qh4a1	A	P05122	GO:0005886
d1qh4a1	A	P05122	GO:0006754
d1qh4a1	A	P05122	GO:0016301
d1qh4a1	A	P05122	GO:0016310
d1qh4a1	A	P05122	GO:0016772
d1qh4a1	A	P05122	GO:0046314
d1qh4a1	A	P05122	GO:0065010

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P	F	S	N	S	H	N	L	L	K	M	K	Y	S	V	D	D	E	Y	P	D	L	S	V	H	N	N	H	M	A	K	V	L	T	L	D	L	Y	K	K	L	R	D	R	Q	T	S	S	G	F	T	L	D	D	V	I	Q	T	G	V	D	N	P	G	H	P	F	I	M	T	V	G	C	V	A	G	D	E	E	S	Y	E	V	F	K	E	L	F	D	P	V	I	E	D	R	H	G	G	Y	K	P
-	-	A	D	A	A	V	I	E	K	L	E	A	G	F	K	K	L	E	-	A	A	T	D	C	K	S	L	L	K	K	Y	L	T	K	E	V	F	D	K	L	K	D	K	K	T	S	L	G	A	T	L	L	D	V	I	Q	S	G	V	E	N	L	D	-	-	-	-	S	G	V	G	I	Y	A	P	D	A	E	A	Y	T	L	F	A	P	L	F	D	P	I	I	E	D	Y	H	V	G	F	K	Q

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P	F	S	N	S	H	N	L	L	K	M	K	Y	S	V	D	D	E	Y	P	D	L	S	V	H	N	N	H	M	A	K	V	L	T	L	D	L	Y	K	K	L	R	D	R	Q	T	S	S	G	F	T	L	D	D	V	I	Q	T	G	V	D	N	P	G	H	P	F	I	M	T	V	G	C	V	A	G	D	E	E	S	Y	E	V	F	K	E	L	F	D	P	V	I	E	D	R	H	G	G	Y	K	P
-	-	A	D	A	A	V	I	E	K	L	E	A	G	F	K	K	L	E	-	A	A	T	D	C	K	S	L	L	K	K	Y	L	T	K	E	V	F	D	K	L	K	D	K	K	T	S	L	G	A	T	L	L	D	V	I	Q	S	G	V	E	N	L	D	-	-	-	-	S	G	V	G	I	Y	A	P	D	A	E	A	Y	T	L	F	A	P	L	F	D	P	I	I	E	D	Y	H	V	G	F	K	Q

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P	F	S	N	S	H	N	L	L	K	M	K	Y	S	V	D	D	E	Y	P	D	L	S	V	H	N	N	H	M	A	K	V	L	T	L	D	L	Y	K	K	L	R	D	R	Q	T	S	S	G	F	T	L	D	D	V	I	Q	T	G	V	D	N	P	G	H	P	F	I	M	T	V	G	C	V	A	G	D	E	E	S	Y	E	V	F	K	E	L	F	D	P	V	I	E	D	R	H	G	G	Y	K	P
-	-	A	D	A	A	V	I	E	K	L	E	A	G	F	K	K	L	E	-	A	A	T	D	C	K	S	L	L	K	K	Y	L	T	K	E	V	F	D	K	L	K	D	K	K	T	S	L	G	A	T	L	L	D	V	I	Q	S	G	V	E	N	L	D	-	-	-	-	S	G	V	G	I	Y	A	P	D	A	E	A	Y	T	L	F	A	P	L	F	D	P	I	I	E	D	Y	H	V	G	F	K	Q