PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1on2a2  (  63 )    tskgkkigkrlvyrhelLeqflrii-gvdeekIyndVegiehhlswnsId
d2dtra2  (  65 )    tptgrtlata-vRkhrLaErlLtdiigldinkVhdeAr-wehv-sdevEr
                     aaaaaaaaa   aaaaaaaaaaa     aaaaaaa    33   aaaaa

                             60        70      
d1on2a2  ( 112 )    rigdlVqyfeeddarkk--dlksiqkk
d2dtra2  ( 115 )    rlvkvLdvs--rSpfgnpIpgldeLgv
                    aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1on2a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1on2a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Manganese transport regulator MntR	Iron-dependent repressor protein, dimerization domain	Bacillus subtilis [TaxId: 1423]		view
d2dtra2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2dtra2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Diphtheria toxin repressor (DtxR)	Iron-dependent repressor protein, dimerization domain	Corynebacterium diphtheriae [TaxId: 1717]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
T	S	K	G	K	K	I	G	K	R	L	V	Y	R	H	E	L	L	E	Q	F	L	R	I	I	-	G	V	D	E	E	K	I	Y	N	D	V	E	G	I	E	H	H	L	S	W	N	S	I	D	R	I	G	D	L	V	Q	Y	F	E	E	D	D	A	R	K	K	-	-	D	L	K	S	I	Q	K	K
T	P	T	G	R	T	L	A	T	A	-	V	R	K	H	R	L	A	E	R	L	L	T	D	I	I	G	L	D	I	N	K	V	H	D	E	A	R	-	W	E	H	V	-	S	D	E	V	E	R	R	L	V	K	V	L	D	V	S	-	-	R	S	P	F	G	N	P	I	P	G	L	D	E	L	G	V

Member	Chain	UniProtKB	GO term
d1on2a2	A	P54512	GO:0003677
d1on2a2	A	P54512	GO:0003700
d1on2a2	A	P54512	GO:0005737
d1on2a2	A	P54512	GO:0006355
d1on2a2	A	P54512	GO:0030026
d1on2a2	A	P54512	GO:0030145
d1on2a2	A	P54512	GO:0046872
d1on2a2	A	P54512	GO:0046914
d1on2a2	A	P54512	GO:0046983
d2dtra2	A	P0DJL7	GO:0003677
d2dtra2	A	P0DJL7	GO:0003700
d2dtra2	A	P0DJL7	GO:0005737
d2dtra2	A	P0DJL7	GO:0006355
d2dtra2	A	P0DJL7	GO:0017124
d2dtra2	A	P0DJL7	GO:0042802
d2dtra2	A	P0DJL7	GO:0045892
d2dtra2	A	P0DJL7	GO:0046914
d2dtra2	A	P0DJL7	GO:0046983

									10										20										30										40										50										60										70
T	S	K	G	K	K	I	G	K	R	L	V	Y	R	H	E	L	L	E	Q	F	L	R	I	I	-	G	V	D	E	E	K	I	Y	N	D	V	E	G	I	E	H	H	L	S	W	N	S	I	D	R	I	G	D	L	V	Q	Y	F	E	E	D	D	A	R	K	K	-	-	D	L	K	S	I	Q	K	K
T	P	T	G	R	T	L	A	T	A	-	V	R	K	H	R	L	A	E	R	L	L	T	D	I	I	G	L	D	I	N	K	V	H	D	E	A	R	-	W	E	H	V	-	S	D	E	V	E	R	R	L	V	K	V	L	D	V	S	-	-	R	S	P	F	G	N	P	I	P	G	L	D	E	L	G	V

									10										20										30										40										50										60										70
T	S	K	G	K	K	I	G	K	R	L	V	Y	R	H	E	L	L	E	Q	F	L	R	I	I	-	G	V	D	E	E	K	I	Y	N	D	V	E	G	I	E	H	H	L	S	W	N	S	I	D	R	I	G	D	L	V	Q	Y	F	E	E	D	D	A	R	K	K	-	-	D	L	K	S	I	Q	K	K
T	P	T	G	R	T	L	A	T	A	-	V	R	K	H	R	L	A	E	R	L	L	T	D	I	I	G	L	D	I	N	K	V	H	D	E	A	R	-	W	E	H	V	-	S	D	E	V	E	R	R	L	V	K	V	L	D	V	S	-	-	R	S	P	F	G	N	P	I	P	G	L	D	E	L	G	V

									10										20										30										40										50										60										70
T	S	K	G	K	K	I	G	K	R	L	V	Y	R	H	E	L	L	E	Q	F	L	R	I	I	-	G	V	D	E	E	K	I	Y	N	D	V	E	G	I	E	H	H	L	S	W	N	S	I	D	R	I	G	D	L	V	Q	Y	F	E	E	D	D	A	R	K	K	-	-	D	L	K	S	I	Q	K	K
T	P	T	G	R	T	L	A	T	A	-	V	R	K	H	R	L	A	E	R	L	L	T	D	I	I	G	L	D	I	N	K	V	H	D	E	A	R	-	W	E	H	V	-	S	D	E	V	E	R	R	L	V	K	V	L	D	V	S	-	-	R	S	P	F	G	N	P	I	P	G	L	D	E	L	G	V