PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1iqva-  (  18 )    ikvMgrWstedVeVkdpsLkpyInleprvhIverLinkVmrsggsskkvr
d1rssa-  (  12 )                        lqpdlvygdvlVtaFinkimr---dgkknl
                                                  aaaaaaaaa        aaa

                             60        70        80        90        100 
d1iqva-  ( 103 )    AyevVkeAFkiIekrtgknPIqVLVwAIenAAPredttsvmfggiryhva
d1rssa-  (  39 )    AariFydACkiIqektgqeplkvFkqAVenVkPrmEvrsrrvgganyqvp
                    aaaaaaaaaaaaaaaa   aaaaaaaaaaaa    bbbbbbb  bbbbbb

                             110       120       130       140       150 
d1iqva-  ( 153 )    vdIsplrrLdvALrnIAlgAsakcyrtkmsFaeALAeEIilAAnkdpkSy
d1rssa-  (  89 )    meVsprrqqsLALrWLvqaAnqrp--er-raAvriAhELmdAaegk--gg
                    b   aaaaaaaaaaaaaaaa          aaaaaaaaaaaaa      a

                             160       170 
d1iqva-  ( 203 )    AyskkleieriAessr    
d1rssa-  ( 134 )    AVkkkedvermAea--hyrw
                    aaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1iqva- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1iqva- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein S7	Ribosomal protein S7	Pyrococcus horikoshii [TaxId: 53953]		view
d1rssa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1rssa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ribosomal protein S7	Ribosomal protein S7	Thermus thermophilus [TaxId: 274]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1iqva_	A	O59230	GO:0000028
d1iqva_	A	O59230	GO:0003729
d1iqva_	A	O59230	GO:0003735
d1iqva_	A	O59230	GO:0005840
d1iqva_	A	O59230	GO:0006412
d1iqva_	A	O59230	GO:0015935
d1iqva_	A	O59230	GO:0019843
d1iqva_	A	O59230	GO:0022627
d1iqva_	A	O59230	GO:1990904
d1rssa_	A	P17291	GO:0000028
d1rssa_	A	P17291	GO:0000049
d1rssa_	A	P17291	GO:0003723
d1rssa_	A	P17291	GO:0003729
d1rssa_	A	P17291	GO:0003735
d1rssa_	A	P17291	GO:0005840
d1rssa_	A	P17291	GO:0006412
d1rssa_	A	P17291	GO:0015935
d1rssa_	A	P17291	GO:0019843
d1rssa_	A	P17291	GO:0022627
d1rssa_	A	P17291	GO:1990904

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