PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2c0ga1  (1146 )    rdgcIeFnevL-nYANi-pdaeQllila-----qeqltdpeqqnAraYLi
d5v8za1  ( 158 )       lpvYdaLAgeFirasgvearqallkqGqdnlssvketqkkwAeqYlk
                                       aaaa                     aaaaaa

                             60        70        80        90        100 
d2c0ga1  (1197 )    YMrkIhevgydfL--etkrLl-lkag-kvteak--eLlk-lnILevFrvh
d5v8za1  ( 205 )    IMgkIldqgedfPasemtrIarlieknkmsdgkkeelqkslnILtaFqk 
                    aaaaaaaa        aaaa                    aaaaa     

                          
d2c0ga1  (1246 )    kvtkta
d5v8za1

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2c0ga1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2c0ga1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Fruit fly (Drosophila melanogaster) [TaxId: 7227]		view
d5v8za1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5v8za1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	ERP29 C domain-like	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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R	D	G	C	I	E	F	N	E	V	L	-	N	Y	A	N	I	-	P	D	A	E	Q	L	L	I	L	A	-	-	-	-	-	Q	E	Q	L	T	D	P	E	Q	Q	N	A	R	A	Y	L	I	Y	M	R	K	I	H	E	V	G	Y	D	F	L	-	-	E	T	K	R	L	L	-	L	K	A	G	-	K	V	T	E	A	K	-	-	E	L	L	K	-	L	N	I	L	E	V	F	R	V	H	K	V	T	K	T	A
-	-	-	L	P	V	Y	D	A	L	A	G	E	F	I	R	A	S	G	V	E	A	R	Q	A	L	L	K	Q	G	Q	D	N	L	S	S	V	K	E	T	Q	K	K	W	A	E	Q	Y	L	K	I	M	G	K	I	L	D	Q	G	E	D	F	P	A	S	E	M	T	R	I	A	R	L	I	E	K	N	K	M	S	D	G	K	K	E	E	L	Q	K	S	L	N	I	L	T	A	F	Q	K	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d2c0ga1	A	O44342	GO:0005783
d2c0ga1	A	O44342	GO:0005788
d2c0ga1	A	O44342	GO:0009306

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