PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2g77a1  ( 247 )    elnsiiqriskFdnilkdktiInqqdLrqISwngIpkihrPvVwKLligY
d2g77a2  ( 443 )                                                      
                                                                      

                             60        70        80        90        100 
d2g77a1  ( 297 )    LpvntkrqegflqrkrkeYrdslkhTfsdqhsrdiptwhqIeiDIprTnp
d2g77a2  ( 443 )                                                      
                                                                      

                             110       120       130       140       150 
d2g77a1  ( 347 )    hipLYqfksVqnSLqrILYLWAirhpasgYvq-----gIndlVTpfFetF
d2g77a2  ( 443 )         gqpgilrqvknLsqlVkridadLynhFqnehVeFiqFAfrWMncl
                           aaaaaaaaaaaaaaaa                aaaaaaaaa  

                             160       170       180       190       200 
d2g77a1  ( 392 )    LteyLppsqiddVkikdPstyMvdeqitdLEADTFwCLtklLeqitd---
d2g77a2  ( 488 )    LmrEFqmgTVirMwd-tYlsetssslneFHvfVCAAFLikwsdqLmemdf
                     333                     aaaaaaaaaaaaaaa aa       

                             210       220       230   
d2g77a1  ( 439 )    -nyih                              
d2g77a2  ( 596 )    qeTitfLqnPpTdwtetdIemLLseAfiwQslyka

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2g77a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2g77a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ypt/Rab-GAP domain of gyp1p, N-terminal domain	Ypt/Rab-GAP domain of gyp1p	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d2g77a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2g77a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Ypt/Rab-GAP domain of gyp1p, C-terminal domain	Ypt/Rab-GAP domain of gyp1p	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term

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