PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1azta1  (  88 )         katkvqdIknNLkeAIetIVaaMsnlvppvelanpenqfrvdyIl
d1cipa1  (  61 )    yseeeCkqykavVYsnTIqSIiaIirAMgrl--kidfgdaaraddarqLf
d1zcba1  (  76 )    fdqrareefrpTIYSnVIkgMrvLVdarekl--hipWgdnknqlhGdkLm
                          a  aaaaaaaaaaaaaaaaaaa              aaaaaaaa

                             60        70        80        90        100 
d1azta1  ( 133 )    svmnvp--------dfdFppeFYehAkaLWedegVraCyersneyqLidC
d1cipa1  ( 109 )    vlag---aAeegfMt----aeLAgVIkrLwkDsgVqaCfnrsreyqLnds
d1zcba1  ( 124 )    aFdtrapmAaqgmVetrvFlqylpAIraLweDsGIqnAydrrrefqLgeS
                                       aaaaaaaaaaaa aaaaaaa  333      

                             110       120       130 
d1azta1  ( 175 )    AqyFLdkIdvIkqddyvPsdqDllrcr   
d1cipa1  ( 152 )    AayYLndLdrIAqpnyiPtqqDVlrTrvkt
d1zcba1  ( 174 )    VkyFLdnldkLGvpdYiPsqqDIllArr  
                    aaaaa  aaaa        aaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1azta1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1azta1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transducin (alpha subunit), insertion domain	Transducin (alpha subunit), insertion domain	Cow (Bos taurus) [TaxId: 9913]	view
d1cipa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1cipa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transducin (alpha subunit), insertion domain	Transducin (alpha subunit), insertion domain	Norway rat (Rattus norvegicus) [TaxId: 10116]	view
d1zcba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1zcba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transducin (alpha subunit), insertion domain	Transducin (alpha subunit), insertion domain	Mouse (Mus musculus) [TaxId: 10090]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1azta1	A	P04896	GO:0003924
d1azta1	A	P04896	GO:0005159
d1azta1	A	P04896	GO:0005525
d1azta1	A	P04896	GO:0005737
d1azta1	A	P04896	GO:0005834
d1azta1	A	P04896	GO:0005886
d1azta1	A	P04896	GO:0007165
d1azta1	A	P04896	GO:0007186
d1azta1	A	P04896	GO:0007189
d1azta1	A	P04896	GO:0007191
d1azta1	A	P04896	GO:0007606
d1azta1	A	P04896	GO:0010856
d1azta1	A	P04896	GO:0016020
d1azta1	A	P04896	GO:0016787
d1azta1	A	P04896	GO:0019001
d1azta1	A	P04896	GO:0031683
d1azta1	A	P04896	GO:0031698
d1azta1	A	P04896	GO:0031748
d1azta1	A	P04896	GO:0031852
d1azta1	A	P04896	GO:0035255
d1azta1	A	P04896	GO:0046872
d1azta1	A	P04896	GO:0051430
d1azta1	A	P04896	GO:0071880
d1cipa1	A	P10824	GO:0000287
d1cipa1	A	P10824	GO:0001664
d1cipa1	A	P10824	GO:0003924
d1cipa1	A	P10824	GO:0005515
d1cipa1	A	P10824	GO:0005525
d1cipa1	A	P10824	GO:0005634
d1cipa1	A	P10824	GO:0005737
d1cipa1	A	P10824	GO:0005813
d1cipa1	A	P10824	GO:0005834
d1cipa1	A	P10824	GO:0005856
d1cipa1	A	P10824	GO:0005886
d1cipa1	A	P10824	GO:0005938
d1cipa1	A	P10824	GO:0007165
d1cipa1	A	P10824	GO:0007186
d1cipa1	A	P10824	GO:0007188
d1cipa1	A	P10824	GO:0016787
d1cipa1	A	P10824	GO:0019001
d1cipa1	A	P10824	GO:0019003
d1cipa1	A	P10824	GO:0030496
d1cipa1	A	P10824	GO:0031683
d1cipa1	A	P10824	GO:0031749
d1cipa1	A	P10824	GO:0031821
d1cipa1	A	P10824	GO:0032794
d1cipa1	A	P10824	GO:0032991
d1cipa1	A	P10824	GO:0043949
d1cipa1	A	P10824	GO:0046872
d1cipa1	A	P10824	GO:0050805
d1cipa1	A	P10824	GO:0051301
d1cipa1	A	P10824	GO:0060236
d1cipa1	A	P10824	GO:0098794
d1cipa1	A	P10824	GO:0098978
d1cipa1	A	P10824	GO:0099645
d1cipa1	A	P10824	GO:1904322
d1cipa1	A	P10824	GO:1904778
d1zcba1	A	P27601	GO:0001525
d1zcba1	A	P27601	GO:0001569
d1zcba1	A	P27601	GO:0001664
d1zcba1	A	P27601	GO:0001701
d1zcba1	A	P27601	GO:0003924
d1zcba1	A	P27601	GO:0003925
d1zcba1	A	P27601	GO:0005515
d1zcba1	A	P27601	GO:0005525
d1zcba1	A	P27601	GO:0005634
d1zcba1	A	P27601	GO:0005737
d1zcba1	A	P27601	GO:0005829
d1zcba1	A	P27601	GO:0005834
d1zcba1	A	P27601	GO:0005886
d1zcba1	A	P27601	GO:0007165
d1zcba1	A	P27601	GO:0007186
d1zcba1	A	P27601	GO:0007188
d1zcba1	A	P27601	GO:0007189
d1zcba1	A	P27601	GO:0007204
d1zcba1	A	P27601	GO:0007266
d1zcba1	A	P27601	GO:0008217
d1zcba1	A	P27601	GO:0008360
d1zcba1	A	P27601	GO:0010762
d1zcba1	A	P27601	GO:0016020
d1zcba1	A	P27601	GO:0019001
d1zcba1	A	P27601	GO:0030154
d1zcba1	A	P27601	GO:0030168
d1zcba1	A	P27601	GO:0031526
d1zcba1	A	P27601	GO:0031683
d1zcba1	A	P27601	GO:0031752
d1zcba1	A	P27601	GO:0035556
d1zcba1	A	P27601	GO:0042470
d1zcba1	A	P27601	GO:0046872
d1zcba1	A	P27601	GO:0098794
d1zcba1	A	P27601	GO:0150052
d1zcba1	A	P27601	GO:1904706
d1zcba1	A	P27601	GO:1904753

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