PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1u9la-  ( 352 )     ahaaidtFtkyLdidedfAtvLveegfstLeeLAyvpmkeLleIegLde
d1y88a1  ( 128 )       ypItiLr----IdkevldeLvraglvfCrdVvsageekLrei-gLsa
d1z4da1  (   5 )         ltdLp---gVgpstaekLveagyidfmkIAtAtvgeLtdiegIse
d2z43b1  (  12 )       ktindLp---gisqtvinkLieagyssLetLAvaspqdLsvaAgIpl
d3ldaa1  (  78 )    gsfvpIekLqvn-gItmadVkkLresglhtAeaVAyaprkdLleikgIse
                                    aaaaaaaaa     aaaaa   aaaaa      a

                             60        
d1u9la-  ( 401 )    ptVeaLrerAknalatiaq
d1y88a1  ( 170 )    kkAreViaeAkkvig    
d1z4da1  (  47 )    kaAakMImgArdlcd-lgf
d2z43b1  (  56 )    stAqkiIkeArdald-ir 
d3ldaa1  ( 127 )    akAdkLlneAarlVp-mgf
                    aaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1u9la- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1u9la- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Transcription elongation protein NusA	NusA extra C-terminal domains	Escherichia coli [TaxId: 562]	view
d1y88a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1y88a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein AF1548, C-terminal domain	Hypothetical protein AF1548, C-terminal domain	Archaeoglobus fulgidus [TaxId: 2234]	view
d1z4da1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1z4da1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA repair protein Rad51, N-terminal domain	DNA repair protein Rad51, N-terminal domain	Methanococcus voltae [TaxId: 2188]	view
d2z43b1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2z43b1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA repair protein Rad51, N-terminal domain	DNA repair protein Rad51, N-terminal domain	Sulfolobus solfataricus [TaxId: 273057]	view
d3ldaa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ldaa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DNA repair protein Rad51, N-terminal domain	DNA repair protein Rad51, N-terminal domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	Y	P	I	T	I	L	R	-	-	-	-	I	D	K	E	V	L	D	E	L	V	R	A	G	L	V	F	C	R	D	V	V	S	A	G	E	E	K	L	R	E	I	-	G	L	S	A	K	K	A	R	E	V	I	A	E	A	K	K	V	I	G	-	-	-	-
-	-	-	-	-	L	T	D	L	P	-	-	-	G	V	G	P	S	T	A	E	K	L	V	E	A	G	Y	I	D	F	M	K	I	A	T	A	T	V	G	E	L	T	D	I	E	G	I	S	E	K	A	A	A	K	M	I	M	G	A	R	D	L	C	D	-	L	G	F
-	-	-	K	T	I	N	D	L	P	-	-	-	G	I	S	Q	T	V	I	N	K	L	I	E	A	G	Y	S	S	L	E	T	L	A	V	A	S	P	Q	D	L	S	V	A	A	G	I	P	L	S	T	A	Q	K	I	I	K	E	A	R	D	A	L	D	-	I	R	-
G	S	F	V	P	I	E	K	L	Q	V	N	-	G	I	T	M	A	D	V	K	K	L	R	E	S	G	L	H	T	A	E	A	V	A	Y	A	P	R	K	D	L	L	E	I	K	G	I	S	E	A	K	A	D	K	L	L	N	E	A	A	R	L	V	P	-	M	G	F

Member	Chain	UniProtKB	GO term
d1u9la_	A	P0AFF6	GO:0000166
d1u9la_	A	P0AFF6	GO:0000166
d1y88a1	A	O28724	GO:0000166
d1y88a1	A	O28724	GO:0003676
d1y88a1	A	O28724	GO:0003677
d1y88a1	A	O28724	GO:0004519
d1y88a1	A	O28724	GO:0009307
d1y88a1	A	O28724	GO:0000166
d1y88a1	A	O28724	GO:0003676
d1y88a1	A	O28724	GO:0003677
d1y88a1	A	O28724	GO:0004519
d1y88a1	A	O28724	GO:0009307

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-	A	H	A	A	I	D	T	F	T	K	Y	L	D	I	D	E	D	F	A	T	V	L	V	E	E	G	F	S	T	L	E	E	L	A	Y	V	P	M	K	E	L	L	E	I	E	G	L	D	E	P	T	V	E	A	L	R	E	R	A	K	N	A	L	A	T	I	A	Q
-	-	-	Y	P	I	T	I	L	R	-	-	-	-	I	D	K	E	V	L	D	E	L	V	R	A	G	L	V	F	C	R	D	V	V	S	A	G	E	E	K	L	R	E	I	-	G	L	S	A	K	K	A	R	E	V	I	A	E	A	K	K	V	I	G	-	-	-	-
-	-	-	-	-	L	T	D	L	P	-	-	-	G	V	G	P	S	T	A	E	K	L	V	E	A	G	Y	I	D	F	M	K	I	A	T	A	T	V	G	E	L	T	D	I	E	G	I	S	E	K	A	A	A	K	M	I	M	G	A	R	D	L	C	D	-	L	G	F
-	-	-	K	T	I	N	D	L	P	-	-	-	G	I	S	Q	T	V	I	N	K	L	I	E	A	G	Y	S	S	L	E	T	L	A	V	A	S	P	Q	D	L	S	V	A	A	G	I	P	L	S	T	A	Q	K	I	I	K	E	A	R	D	A	L	D	-	I	R	-
G	S	F	V	P	I	E	K	L	Q	V	N	-	G	I	T	M	A	D	V	K	K	L	R	E	S	G	L	H	T	A	E	A	V	A	Y	A	P	R	K	D	L	L	E	I	K	G	I	S	E	A	K	A	D	K	L	L	N	E	A	A	R	L	V	P	-	M	G	F

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-	A	H	A	A	I	D	T	F	T	K	Y	L	D	I	D	E	D	F	A	T	V	L	V	E	E	G	F	S	T	L	E	E	L	A	Y	V	P	M	K	E	L	L	E	I	E	G	L	D	E	P	T	V	E	A	L	R	E	R	A	K	N	A	L	A	T	I	A	Q
-	-	-	Y	P	I	T	I	L	R	-	-	-	-	I	D	K	E	V	L	D	E	L	V	R	A	G	L	V	F	C	R	D	V	V	S	A	G	E	E	K	L	R	E	I	-	G	L	S	A	K	K	A	R	E	V	I	A	E	A	K	K	V	I	G	-	-	-	-
-	-	-	-	-	L	T	D	L	P	-	-	-	G	V	G	P	S	T	A	E	K	L	V	E	A	G	Y	I	D	F	M	K	I	A	T	A	T	V	G	E	L	T	D	I	E	G	I	S	E	K	A	A	A	K	M	I	M	G	A	R	D	L	C	D	-	L	G	F
-	-	-	K	T	I	N	D	L	P	-	-	-	G	I	S	Q	T	V	I	N	K	L	I	E	A	G	Y	S	S	L	E	T	L	A	V	A	S	P	Q	D	L	S	V	A	A	G	I	P	L	S	T	A	Q	K	I	I	K	E	A	R	D	A	L	D	-	I	R	-
G	S	F	V	P	I	E	K	L	Q	V	N	-	G	I	T	M	A	D	V	K	K	L	R	E	S	G	L	H	T	A	E	A	V	A	Y	A	P	R	K	D	L	L	E	I	K	G	I	S	E	A	K	A	D	K	L	L	N	E	A	A	R	L	V	P	-	M	G	F

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-	-	-	Y	P	I	T	I	L	R	-	-	-	-	I	D	K	E	V	L	D	E	L	V	R	A	G	L	V	F	C	R	D	V	V	S	A	G	E	E	K	L	R	E	I	-	G	L	S	A	K	K	A	R	E	V	I	A	E	A	K	K	V	I	G	-	-	-	-
-	-	-	-	-	L	T	D	L	P	-	-	-	G	V	G	P	S	T	A	E	K	L	V	E	A	G	Y	I	D	F	M	K	I	A	T	A	T	V	G	E	L	T	D	I	E	G	I	S	E	K	A	A	A	K	M	I	M	G	A	R	D	L	C	D	-	L	G	F
-	-	-	K	T	I	N	D	L	P	-	-	-	G	I	S	Q	T	V	I	N	K	L	I	E	A	G	Y	S	S	L	E	T	L	A	V	A	S	P	Q	D	L	S	V	A	A	G	I	P	L	S	T	A	Q	K	I	I	K	E	A	R	D	A	L	D	-	I	R	-
G	S	F	V	P	I	E	K	L	Q	V	N	-	G	I	T	M	A	D	V	K	K	L	R	E	S	G	L	H	T	A	E	A	V	A	Y	A	P	R	K	D	L	L	E	I	K	G	I	S	E	A	K	A	D	K	L	L	N	E	A	A	R	L	V	P	-	M	G	F