PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2rmra-  ( 119 )    qrlkvedalsyldqvklqfgsqpqvyndFldimkefksqsidtpgvisrv
d6xawa-  ( 405 )     dvefsqaisyvnkIktrfadqpdiykhFleilqtyqreqkpineVyaqV
                            aaaaaaaaaa    aaaaaaaaaaaaaaa     aaaaaaaa

                             60        70  
d2rmra-  ( 169 )    sqlFkghpdlimgFntflppg
d6xawa-  ( 454 )    thlFqnApdLledfkkflpd 
                    aaa    aaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2rmra- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2rmra- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Sin3A	PAH2 domain	Mouse (Mus musculus) [TaxId: 10090]		view
d6xawa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6xawa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	PAH2 domain	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
Q	R	L	K	V	E	D	A	L	S	Y	L	D	Q	V	K	L	Q	F	G	S	Q	P	Q	V	Y	N	D	F	L	D	I	M	K	E	F	K	S	Q	S	I	D	T	P	G	V	I	S	R	V	S	Q	L	F	K	G	H	P	D	L	I	M	G	F	N	T	F	L	P	P	G
-	D	V	E	F	S	Q	A	I	S	Y	V	N	K	I	K	T	R	F	A	D	Q	P	D	I	Y	K	H	F	L	E	I	L	Q	T	Y	Q	R	E	Q	K	P	I	N	E	V	Y	A	Q	V	T	H	L	F	Q	N	A	P	D	L	L	E	D	F	K	K	F	L	P	D	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70
Q	R	L	K	V	E	D	A	L	S	Y	L	D	Q	V	K	L	Q	F	G	S	Q	P	Q	V	Y	N	D	F	L	D	I	M	K	E	F	K	S	Q	S	I	D	T	P	G	V	I	S	R	V	S	Q	L	F	K	G	H	P	D	L	I	M	G	F	N	T	F	L	P	P	G
-	D	V	E	F	S	Q	A	I	S	Y	V	N	K	I	K	T	R	F	A	D	Q	P	D	I	Y	K	H	F	L	E	I	L	Q	T	Y	Q	R	E	Q	K	P	I	N	E	V	Y	A	Q	V	T	H	L	F	Q	N	A	P	D	L	L	E	D	F	K	K	F	L	P	D	-

									10										20										30										40										50										60										70
Q	R	L	K	V	E	D	A	L	S	Y	L	D	Q	V	K	L	Q	F	G	S	Q	P	Q	V	Y	N	D	F	L	D	I	M	K	E	F	K	S	Q	S	I	D	T	P	G	V	I	S	R	V	S	Q	L	F	K	G	H	P	D	L	I	M	G	F	N	T	F	L	P	P	G
-	D	V	E	F	S	Q	A	I	S	Y	V	N	K	I	K	T	R	F	A	D	Q	P	D	I	Y	K	H	F	L	E	I	L	Q	T	Y	Q	R	E	Q	K	P	I	N	E	V	Y	A	Q	V	T	H	L	F	Q	N	A	P	D	L	L	E	D	F	K	K	F	L	P	D	-

									10										20										30										40										50										60										70
Q	R	L	K	V	E	D	A	L	S	Y	L	D	Q	V	K	L	Q	F	G	S	Q	P	Q	V	Y	N	D	F	L	D	I	M	K	E	F	K	S	Q	S	I	D	T	P	G	V	I	S	R	V	S	Q	L	F	K	G	H	P	D	L	I	M	G	F	N	T	F	L	P	P	G
-	D	V	E	F	S	Q	A	I	S	Y	V	N	K	I	K	T	R	F	A	D	Q	P	D	I	Y	K	H	F	L	E	I	L	Q	T	Y	Q	R	E	Q	K	P	I	N	E	V	Y	A	Q	V	T	H	L	F	Q	N	A	P	D	L	L	E	D	F	K	K	F	L	P	D	-