PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d4cz5a-  ( 303 )    eiftlqvrgreryeilkklndslelsdvv             
d5hobg-  ( 353 )    dtyylqvrgrknfeilmelkrslelmlvpqplvdsyeqqqll
                             aaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4cz5a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4cz5a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Zebrafish (Danio rerio) [TaxId: 7955]		view
d5hobg- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5hobg- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	I	F	T	L	Q	V	R	G	R	E	R	Y	E	I	L	K	K	L	N	D	S	L	E	L	S	D	V	V	-	-	-	-	-	-	-	-	-	-	-	-	-
D	T	Y	Y	L	Q	V	R	G	R	K	N	F	E	I	L	M	E	L	K	R	S	L	E	L	M	L	V	P	Q	P	L	V	D	S	Y	E	Q	Q	Q	L	L

Member	Chain	UniProtKB	GO term

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E	I	F	T	L	Q	V	R	G	R	E	R	Y	E	I	L	K	K	L	N	D	S	L	E	L	S	D	V	V	-	-	-	-	-	-	-	-	-	-	-	-	-
D	T	Y	Y	L	Q	V	R	G	R	K	N	F	E	I	L	M	E	L	K	R	S	L	E	L	M	L	V	P	Q	P	L	V	D	S	Y	E	Q	Q	Q	L	L

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E	I	F	T	L	Q	V	R	G	R	E	R	Y	E	I	L	K	K	L	N	D	S	L	E	L	S	D	V	V	-	-	-	-	-	-	-	-	-	-	-	-	-
D	T	Y	Y	L	Q	V	R	G	R	K	N	F	E	I	L	M	E	L	K	R	S	L	E	L	M	L	V	P	Q	P	L	V	D	S	Y	E	Q	Q	Q	L	L

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E	I	F	T	L	Q	V	R	G	R	E	R	Y	E	I	L	K	K	L	N	D	S	L	E	L	S	D	V	V	-	-	-	-	-	-	-	-	-	-	-	-	-
D	T	Y	Y	L	Q	V	R	G	R	K	N	F	E	I	L	M	E	L	K	R	S	L	E	L	M	L	V	P	Q	P	L	V	D	S	Y	E	Q	Q	Q	L	L