PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2a73b3  ( 651 )      vqltekrmdkvgkyp-kelrkÇÇedGMrenpmrfsÇqrrtrfislgea
d4p3aa1  ( 679 )    nlhllrqkIeeqAakykhsvpkkçÇydGarvnf-yetçeervarvtigpl
                           aaaa          aaaaaaaa        aaaa       aa

                             60        70  
d2a73b3  ( 698 )    ÇkkvfldÇÇnyItelrrqhara
d4p3aa1  ( 728 )    ÇirAfneÇÇtiAnkirkes   
                    aaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2a73b3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2a73b3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	C3 ANA (anaphylatoxin) domain	Anaphylotoxins (complement system)	Human (Homo sapiens) [TaxId: 9606]		view
d4p3aa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4p3aa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Anaphylotoxins (complement system)	Mouse (Mus musculus) [TaxId: 10090]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
-	-	V	Q	L	T	E	K	R	M	D	K	V	G	K	Y	P	-	K	E	L	R	K	C	C	E	D	G	M	R	E	N	P	M	R	F	S	C	Q	R	R	T	R	F	I	S	L	G	E	A	C	K	K	V	F	L	D	C	C	N	Y	I	T	E	L	R	R	Q	H	A	R	A
N	L	H	L	L	R	Q	K	I	E	E	Q	A	A	K	Y	K	H	S	V	P	K	K	C	C	Y	D	G	A	R	V	N	F	-	Y	E	T	C	E	E	R	V	A	R	V	T	I	G	P	L	C	I	R	A	F	N	E	C	C	T	I	A	N	K	I	R	K	E	S	-	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70
-	-	V	Q	L	T	E	K	R	M	D	K	V	G	K	Y	P	-	K	E	L	R	K	C	C	E	D	G	M	R	E	N	P	M	R	F	S	C	Q	R	R	T	R	F	I	S	L	G	E	A	C	K	K	V	F	L	D	C	C	N	Y	I	T	E	L	R	R	Q	H	A	R	A
N	L	H	L	L	R	Q	K	I	E	E	Q	A	A	K	Y	K	H	S	V	P	K	K	C	C	Y	D	G	A	R	V	N	F	-	Y	E	T	C	E	E	R	V	A	R	V	T	I	G	P	L	C	I	R	A	F	N	E	C	C	T	I	A	N	K	I	R	K	E	S	-	-	-

									10										20										30										40										50										60										70
-	-	V	Q	L	T	E	K	R	M	D	K	V	G	K	Y	P	-	K	E	L	R	K	C	C	E	D	G	M	R	E	N	P	M	R	F	S	C	Q	R	R	T	R	F	I	S	L	G	E	A	C	K	K	V	F	L	D	C	C	N	Y	I	T	E	L	R	R	Q	H	A	R	A
N	L	H	L	L	R	Q	K	I	E	E	Q	A	A	K	Y	K	H	S	V	P	K	K	C	C	Y	D	G	A	R	V	N	F	-	Y	E	T	C	E	E	R	V	A	R	V	T	I	G	P	L	C	I	R	A	F	N	E	C	C	T	I	A	N	K	I	R	K	E	S	-	-	-

									10										20										30										40										50										60										70
-	-	V	Q	L	T	E	K	R	M	D	K	V	G	K	Y	P	-	K	E	L	R	K	C	C	E	D	G	M	R	E	N	P	M	R	F	S	C	Q	R	R	T	R	F	I	S	L	G	E	A	C	K	K	V	F	L	D	C	C	N	Y	I	T	E	L	R	R	Q	H	A	R	A
N	L	H	L	L	R	Q	K	I	E	E	Q	A	A	K	Y	K	H	S	V	P	K	K	C	C	Y	D	G	A	R	V	N	F	-	Y	E	T	C	E	E	R	V	A	R	V	T	I	G	P	L	C	I	R	A	F	N	E	C	C	T	I	A	N	K	I	R	K	E	S	-	-	-