PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1khda1  (  13 )      hqpiLekLfksqsMtqeeShqLfaAivrgeledsqlaaAlisMkmrge
d1uoua1  (  34 )    kqlp-LirmKrdggrLseadIrgfvaavvngsAqgaqigaMlmairlrgM
d2elca1  (   1 )       mdaVkkAilgevLeeeeAyeVmralmageVspvraagLlvaLslrge
d4eada1  (   2 )    flaqeIirkKrdghaLsdeeIrfFingirdntIsegqiaalamtiffhdM
                         aaaaaa      aaaaaaaaaaaa     aaaaaaaaaaaaaa  

                             60        70  
d1khda1  (  61 )    rpeEiaGaasAlladaqpfp
d1uoua1  (  84 )    dleEtsvltqAlaqsgq   
d2elca1  (  48 )    rphEiaAmarAmreaarp  
d4eada1  (  52 )    tmpErvsltmAmrdsgt-vl
                     aaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1khda1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1khda1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Anthranilate phosphoribosyltransferase (TrpD)	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	Pectobacterium carotovorum [TaxId: 554]	view
d1uoua1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1uoua1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thymidine phosphorylase	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	Human (Homo sapiens) [TaxId: 9606]	view
d2elca1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2elca1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Anthranilate phosphoribosyltransferase (TrpD)	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	Thermus thermophilus [TaxId: 274]	view
d4eada1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4eada1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Thymidine phosphorylase	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	Escherichia coli [TaxId: 562]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1khda1	A	Q8VP84	GO:0000162
d1khda1	A	Q8VP84	GO:0000287
d1khda1	A	Q8VP84	GO:0004048
d1khda1	A	Q8VP84	GO:0005829
d1khda1	A	Q8VP84	GO:0016757
d1khda1	A	Q8VP84	GO:0016763
d1khda1	A	Q8VP84	GO:0046872
d1uoua1	A	P19971	GO:0000002
d1uoua1	A	P19971	GO:0001525
d1uoua1	A	P19971	GO:0004645
d1uoua1	A	P19971	GO:0005515
d1uoua1	A	P19971	GO:0005829
d1uoua1	A	P19971	GO:0006206
d1uoua1	A	P19971	GO:0006213
d1uoua1	A	P19971	GO:0006935
d1uoua1	A	P19971	GO:0007165
d1uoua1	A	P19971	GO:0008083
d1uoua1	A	P19971	GO:0009032
d1uoua1	A	P19971	GO:0016154
d1uoua1	A	P19971	GO:0016757
d1uoua1	A	P19971	GO:0016763
d1uoua1	A	P19971	GO:0030154
d1uoua1	A	P19971	GO:0031641
d1uoua1	A	P19971	GO:0042803
d1uoua1	A	P19971	GO:0046074
d1uoua1	A	P19971	GO:0051969
d1uoua1	A	P19971	GO:1905333
d1uoua1	A	P19971	GO:0000002
d1uoua1	A	P19971	GO:0001525
d1uoua1	A	P19971	GO:0004645
d1uoua1	A	P19971	GO:0005515
d1uoua1	A	P19971	GO:0005829
d1uoua1	A	P19971	GO:0006206
d1uoua1	A	P19971	GO:0006213
d1uoua1	A	P19971	GO:0006935
d1uoua1	A	P19971	GO:0007165
d1uoua1	A	P19971	GO:0008083
d1uoua1	A	P19971	GO:0009032
d1uoua1	A	P19971	GO:0016154
d1uoua1	A	P19971	GO:0016757
d1uoua1	A	P19971	GO:0016763
d1uoua1	A	P19971	GO:0030154
d1uoua1	A	P19971	GO:0031641
d1uoua1	A	P19971	GO:0042803
d1uoua1	A	P19971	GO:0046074
d1uoua1	A	P19971	GO:0051969
d1uoua1	A	P19971	GO:1905333
d2elca1	A	Q5SH88	GO:0000162
d2elca1	A	Q5SH88	GO:0000287
d2elca1	A	Q5SH88	GO:0004048
d2elca1	A	Q5SH88	GO:0005829
d2elca1	A	Q5SH88	GO:0016757
d2elca1	A	Q5SH88	GO:0016763
d2elca1	A	Q5SH88	GO:0046872
d2elca1	A	Q5SH88	GO:0000162
d2elca1	A	Q5SH88	GO:0000287
d2elca1	A	Q5SH88	GO:0004048
d2elca1	A	Q5SH88	GO:0005829
d2elca1	A	Q5SH88	GO:0016757
d2elca1	A	Q5SH88	GO:0016763
d2elca1	A	Q5SH88	GO:0046872

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K	Q	L	P	-	L	I	R	M	K	R	D	G	G	R	L	S	E	A	D	I	R	G	F	V	A	A	V	V	N	G	S	A	Q	G	A	Q	I	G	A	M	L	M	A	I	R	L	R	G	M	D	L	E	E	T	S	V	L	T	Q	A	L	A	Q	S	G	Q	-	-	-
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K	Q	L	P	-	L	I	R	M	K	R	D	G	G	R	L	S	E	A	D	I	R	G	F	V	A	A	V	V	N	G	S	A	Q	G	A	Q	I	G	A	M	L	M	A	I	R	L	R	G	M	D	L	E	E	T	S	V	L	T	Q	A	L	A	Q	S	G	Q	-	-	-
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K	Q	L	P	-	L	I	R	M	K	R	D	G	G	R	L	S	E	A	D	I	R	G	F	V	A	A	V	V	N	G	S	A	Q	G	A	Q	I	G	A	M	L	M	A	I	R	L	R	G	M	D	L	E	E	T	S	V	L	T	Q	A	L	A	Q	S	G	Q	-	-	-
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