PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1k1va-  (  24 )                    ltdeelvtmsvrelnqhlr--glskeeiiqlkqr
d1sknp-  ( 456 )    grqskdeqlAsdneLpvsafqISemslseLqqvlknesLseyqrqLIrkI
                                      aaaaaa  aaaa          aaaaaaaaaa

                             60        70   
d1k1va-  (  56 )    rrtlknrgy               
d1sknp-  ( 506 )    rrrgknkvaartcrqrrtdrhdkm
                    aaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1k1va- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1k1va- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Mafg	A DNA-binding domain in eukaryotic transcription factors	Mouse (Mus musculus) [TaxId: 10090]		view
d1sknp- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1sknp- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Skn-1	A DNA-binding domain in eukaryotic transcription factors	Nematode (Caenorhabditis elegans) [TaxId: 6239]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	T	D	E	E	L	V	T	M	S	V	R	E	L	N	Q	H	L	R	-	-	G	L	S	K	E	E	I	I	Q	L	K	Q	R	R	R	T	L	K	N	R	G	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	R	Q	S	K	D	E	Q	L	A	S	D	N	E	L	P	V	S	A	F	Q	I	S	E	M	S	L	S	E	L	Q	Q	V	L	K	N	E	S	L	S	E	Y	Q	R	Q	L	I	R	K	I	R	R	R	G	K	N	K	V	A	A	R	T	C	R	Q	R	R	T	D	R	H	D	K	M

Member	Chain	UniProtKB	GO term
d1k1va_	A	O54790	GO:0003677
d1k1va_	A	O54790	GO:0003700
d1k1va_	A	O54790	GO:0006355
d1k1va_	A	O54790	GO:0003677
d1k1va_	A	O54790	GO:0003700
d1k1va_	A	O54790	GO:0006355
d1sknp_	P	P34707	GO:0000978
d1sknp_	P	P34707	GO:0003677
d1sknp_	P	P34707	GO:0003700
d1sknp_	P	P34707	GO:0006355
d1sknp_	P	P34707	GO:0006357
d1sknp_	P	P34707	GO:0000978
d1sknp_	P	P34707	GO:0003677
d1sknp_	P	P34707	GO:0003700
d1sknp_	P	P34707	GO:0006355
d1sknp_	P	P34707	GO:0006357

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	T	D	E	E	L	V	T	M	S	V	R	E	L	N	Q	H	L	R	-	-	G	L	S	K	E	E	I	I	Q	L	K	Q	R	R	R	T	L	K	N	R	G	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	R	Q	S	K	D	E	Q	L	A	S	D	N	E	L	P	V	S	A	F	Q	I	S	E	M	S	L	S	E	L	Q	Q	V	L	K	N	E	S	L	S	E	Y	Q	R	Q	L	I	R	K	I	R	R	R	G	K	N	K	V	A	A	R	T	C	R	Q	R	R	T	D	R	H	D	K	M

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	T	D	E	E	L	V	T	M	S	V	R	E	L	N	Q	H	L	R	-	-	G	L	S	K	E	E	I	I	Q	L	K	Q	R	R	R	T	L	K	N	R	G	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	R	Q	S	K	D	E	Q	L	A	S	D	N	E	L	P	V	S	A	F	Q	I	S	E	M	S	L	S	E	L	Q	Q	V	L	K	N	E	S	L	S	E	Y	Q	R	Q	L	I	R	K	I	R	R	R	G	K	N	K	V	A	A	R	T	C	R	Q	R	R	T	D	R	H	D	K	M

									10										20										30										40										50										60										70
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	L	T	D	E	E	L	V	T	M	S	V	R	E	L	N	Q	H	L	R	-	-	G	L	S	K	E	E	I	I	Q	L	K	Q	R	R	R	T	L	K	N	R	G	Y	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
G	R	Q	S	K	D	E	Q	L	A	S	D	N	E	L	P	V	S	A	F	Q	I	S	E	M	S	L	S	E	L	Q	Q	V	L	K	N	E	S	L	S	E	Y	Q	R	Q	L	I	R	K	I	R	R	R	G	K	N	K	V	A	A	R	T	C	R	Q	R	R	T	D	R	H	D	K	M