PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2izxa-  (   5 )           ipp--gltellqgytvevlrqqppdlvefaveyftrlrear  
d3im3a-  (  12 )    slrecelyvqkhniqallkdSivqlctarperpmaflreyfeklekeeak
                                 aaaaaaaaaaaaaaa    aaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2izxa- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2izxa- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit	Human (Homo sapiens) [TaxId: 9606]		view
d3im3a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3im3a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	cAMP-dependent protein kinase type I-alpha regulatory subunit	Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit	Cow (Bos taurus) [TaxId: 9913]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50
-	-	-	-	-	-	-	I	P	P	-	-	G	L	T	E	L	L	Q	G	Y	T	V	E	V	L	R	Q	Q	P	P	D	L	V	E	F	A	V	E	Y	F	T	R	L	R	E	A	R	-	-
S	L	R	E	C	E	L	Y	V	Q	K	H	N	I	Q	A	L	L	K	D	S	I	V	Q	L	C	T	A	R	P	E	R	P	M	A	F	L	R	E	Y	F	E	K	L	E	K	E	E	A	K

									10										20										30										40										50
-	-	-	-	-	-	-	I	P	P	-	-	G	L	T	E	L	L	Q	G	Y	T	V	E	V	L	R	Q	Q	P	P	D	L	V	E	F	A	V	E	Y	F	T	R	L	R	E	A	R	-	-
S	L	R	E	C	E	L	Y	V	Q	K	H	N	I	Q	A	L	L	K	D	S	I	V	Q	L	C	T	A	R	P	E	R	P	M	A	F	L	R	E	Y	F	E	K	L	E	K	E	E	A	K

									10										20										30										40										50
-	-	-	-	-	-	-	I	P	P	-	-	G	L	T	E	L	L	Q	G	Y	T	V	E	V	L	R	Q	Q	P	P	D	L	V	E	F	A	V	E	Y	F	T	R	L	R	E	A	R	-	-
S	L	R	E	C	E	L	Y	V	Q	K	H	N	I	Q	A	L	L	K	D	S	I	V	Q	L	C	T	A	R	P	E	R	P	M	A	F	L	R	E	Y	F	E	K	L	E	K	E	E	A	K

									10										20										30										40										50
-	-	-	-	-	-	-	I	P	P	-	-	G	L	T	E	L	L	Q	G	Y	T	V	E	V	L	R	Q	Q	P	P	D	L	V	E	F	A	V	E	Y	F	T	R	L	R	E	A	R	-	-
S	L	R	E	C	E	L	Y	V	Q	K	H	N	I	Q	A	L	L	K	D	S	I	V	Q	L	C	T	A	R	P	E	R	P	M	A	F	L	R	E	Y	F	E	K	L	E	K	E	E	A	K