PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1cgme-  (   1 )    aynpitpskliafsASyVPvrtLlnfLvasqgtafqtqagrdsfreslsa
d6saea-  (   1 )    sYsittpsQfvflssAWAdpieLinlCtnAlgnqFqtqqaRtvVqrqFse
                                        aaaaaaaaa         aaaaaaaaaaaa

                             60        70        80        90        100 
d1cgme-  (  51 )    lPsSvvdinsrfpdaGfyAfLngpvLrpifvsllsstdtrnrvievvdps
d6saea-  (  51 )    vwkpsPqvtvrFpdsdfkVYrynavLdplVtaLlgaFdtrnriievenqa
                                                aaaaaaaa              

                             110       120       130       140       150 
d1cgme-  ( 101 )    npttaeslnavkrtddastaAraeidnLiesIskgfdvydrasfeaafsv
d6saea-  ( 101 )    npttaetldatrrvddatvaIrsaInnLiveLirgtGsynrssFessSgL
                              aaaaaaaaaaaaaaaaaaaaaaa       aaaaaaa   

                             160 
d1cgme-  ( 151 )    vwseattska
d6saea-  ( 151 )    vwt

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1cgme- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1cgme- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cucumber green mottle mosaic virus	TMV-like viral coat proteins	Cucumber green mottle mosaic virus, strain watermelon [TaxId: 12235]		view
d6saea- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6saea- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tobacco mosaic virus coat protein	TMV-like viral coat proteins	Tobacco mosaic virus, vulgare strain [TaxId: 12242]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	Y	N	P	I	T	P	S	K	L	I	A	F	S	A	S	Y	V	P	V	R	T	L	L	N	F	L	V	A	S	Q	G	T	A	F	Q	T	Q	A	G	R	D	S	F	R	E	S	L	S	A	L	P	S	S	V	V	D	I	N	S	R	F	P	D	A	G	F	Y	A	F	L	N	G	P	V	L	R	P	I	F	V	S	L	L	S	S	T	D	T	R	N	R	V	I	E	V	V	D	P	S	N	P	T	T	A	E	S	L	N	A	V	K	R	T	D	D	A	S	T	A	A	R	A	E	I	D	N	L	I	E	S	I	S	K	G	F	D	V	Y	D	R	A	S	F	E	A	A	F	S	V	V	W	S	E	A	T	T	S	K	A
S	Y	S	I	T	T	P	S	Q	F	V	F	L	S	S	A	W	A	D	P	I	E	L	I	N	L	C	T	N	A	L	G	N	Q	F	Q	T	Q	Q	A	R	T	V	V	Q	R	Q	F	S	E	V	W	K	P	S	P	Q	V	T	V	R	F	P	D	S	D	F	K	V	Y	R	Y	N	A	V	L	D	P	L	V	T	A	L	L	G	A	F	D	T	R	N	R	I	I	E	V	E	N	Q	A	N	P	T	T	A	E	T	L	D	A	T	R	R	V	D	D	A	T	V	A	I	R	S	A	I	N	N	L	I	V	E	L	I	R	G	T	G	S	Y	N	R	S	S	F	E	S	S	S	G	L	V	W	T	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term
d1cgme_	E	P69475	GO:0005198
d1cgme_	E	P69475	GO:0019028
d1cgme_	E	P69475	GO:0019029

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S	Y	S	I	T	T	P	S	Q	F	V	F	L	S	S	A	W	A	D	P	I	E	L	I	N	L	C	T	N	A	L	G	N	Q	F	Q	T	Q	Q	A	R	T	V	V	Q	R	Q	F	S	E	V	W	K	P	S	P	Q	V	T	V	R	F	P	D	S	D	F	K	V	Y	R	Y	N	A	V	L	D	P	L	V	T	A	L	L	G	A	F	D	T	R	N	R	I	I	E	V	E	N	Q	A	N	P	T	T	A	E	T	L	D	A	T	R	R	V	D	D	A	T	V	A	I	R	S	A	I	N	N	L	I	V	E	L	I	R	G	T	G	S	Y	N	R	S	S	F	E	S	S	S	G	L	V	W	T	-	-	-	-	-	-	-

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S	Y	S	I	T	T	P	S	Q	F	V	F	L	S	S	A	W	A	D	P	I	E	L	I	N	L	C	T	N	A	L	G	N	Q	F	Q	T	Q	Q	A	R	T	V	V	Q	R	Q	F	S	E	V	W	K	P	S	P	Q	V	T	V	R	F	P	D	S	D	F	K	V	Y	R	Y	N	A	V	L	D	P	L	V	T	A	L	L	G	A	F	D	T	R	N	R	I	I	E	V	E	N	Q	A	N	P	T	T	A	E	T	L	D	A	T	R	R	V	D	D	A	T	V	A	I	R	S	A	I	N	N	L	I	V	E	L	I	R	G	T	G	S	Y	N	R	S	S	F	E	S	S	S	G	L	V	W	T	-	-	-	-	-	-	-

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A	Y	N	P	I	T	P	S	K	L	I	A	F	S	A	S	Y	V	P	V	R	T	L	L	N	F	L	V	A	S	Q	G	T	A	F	Q	T	Q	A	G	R	D	S	F	R	E	S	L	S	A	L	P	S	S	V	V	D	I	N	S	R	F	P	D	A	G	F	Y	A	F	L	N	G	P	V	L	R	P	I	F	V	S	L	L	S	S	T	D	T	R	N	R	V	I	E	V	V	D	P	S	N	P	T	T	A	E	S	L	N	A	V	K	R	T	D	D	A	S	T	A	A	R	A	E	I	D	N	L	I	E	S	I	S	K	G	F	D	V	Y	D	R	A	S	F	E	A	A	F	S	V	V	W	S	E	A	T	T	S	K	A
S	Y	S	I	T	T	P	S	Q	F	V	F	L	S	S	A	W	A	D	P	I	E	L	I	N	L	C	T	N	A	L	G	N	Q	F	Q	T	Q	Q	A	R	T	V	V	Q	R	Q	F	S	E	V	W	K	P	S	P	Q	V	T	V	R	F	P	D	S	D	F	K	V	Y	R	Y	N	A	V	L	D	P	L	V	T	A	L	L	G	A	F	D	T	R	N	R	I	I	E	V	E	N	Q	A	N	P	T	T	A	E	T	L	D	A	T	R	R	V	D	D	A	T	V	A	I	R	S	A	I	N	N	L	I	V	E	L	I	R	G	T	G	S	Y	N	R	S	S	F	E	S	S	S	G	L	V	W	T	-	-	-	-	-	-	-