PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1mixa1  ( 195 )    mkffysdqnVds-r-dpvqLnllYvqarddIlngsh-pVsfdkACeFAGy
d2al6a1  ( 131 )          kgflnqftedkptLnffYqqVkndYmleiAdqVdqeiAlkLGCL
d4yl8a2  (  88 )            dvseeliqditqrlfFlqvkegIlnddi-yCppetAvlLASy
d5ryoa2  ( 191 )           pdPaq-lseditryylClqLrddIvsgrL-pCsfvtlAlLgSy
                             aa     aaaaaaaaaaaaaaaa        aaaaaaaaaa

                             60        70        80        90        100 
d1mixa1  ( 242 )    QCQIqfgphneqkHk----pgfLe----lkdFLPkeyi------kqkGer
d2al6a1  ( 175 )    EIRrsygemrgnaLekksnYevlekdvglrrFFPksLldsvk--aktLrk
d4yl8a2  ( 129 )    aVQskygdfn--vhs-----gyLa----gdklLPqrVleqhklnkdqwee
d5ryoa2  ( 232 )    tvQSelgdydpdecg----sdyiS----efrFAp--nh------tkeLEd
                    aaaaaa                                       aaaaa

                             110       120       130 
d1mixa1  ( 278 )    kIfmaHknCgnmseieAkvrYVklArslkty
d2al6a1  ( 223 )    lIqqtFrqFanlnreeSIlkFFeiLspvyrf
d4yl8a2  ( 171 )    rIqvwHeeHrgmlredAvleYLkiAqdl   
d5ryoa2  ( 266 )    kVielHkshrgmtpaeAemhFLenAkklsmy
                    aaaaaaaa     aaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1mixa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1mixa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Talin	Second domain of FERM	Chicken (Gallus gallus) [TaxId: 9031]	view
d2al6a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2al6a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Focal adhesion kinase 1	Second domain of FERM	Chicken (Gallus gallus) [TaxId: 9031]	view
d4yl8a2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4yl8a2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Moesin	Second domain of FERM	Mouse (Mus musculus) [TaxId: 10090]	view
d5ryoa2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5ryoa2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1mixa1	A	P54939	GO:0005856
d1mixa1	A	P54939	GO:0005856
d2al6a1	A	Q00944	GO:0005856
d2al6a1	A	Q00944	GO:0005856
d2al6a1	A	Q00944	GO:0005856

									10										20										30										40										50										60										70										80										90										100										110										120										130
M	K	F	F	Y	S	D	Q	N	V	D	S	-	R	-	D	P	V	Q	L	N	L	L	Y	V	Q	A	R	D	D	I	L	N	G	S	H	-	P	V	S	F	D	K	A	C	E	F	A	G	Y	Q	C	Q	I	Q	F	G	P	H	N	E	Q	K	H	K	-	-	-	-	P	G	F	L	E	-	-	-	-	L	K	D	F	L	P	K	E	Y	I	-	-	-	-	-	-	K	Q	K	G	E	R	K	I	F	M	A	H	K	N	C	G	N	M	S	E	I	E	A	K	V	R	Y	V	K	L	A	R	S	L	K	T	Y
-	-	-	-	-	-	K	G	F	L	N	Q	F	T	E	D	K	P	T	L	N	F	F	Y	Q	Q	V	K	N	D	Y	M	L	E	I	A	D	Q	V	D	Q	E	I	A	L	K	L	G	C	L	E	I	R	R	S	Y	G	E	M	R	G	N	A	L	E	K	K	S	N	Y	E	V	L	E	K	D	V	G	L	R	R	F	F	P	K	S	L	L	D	S	V	K	-	-	A	K	T	L	R	K	L	I	Q	Q	T	F	R	Q	F	A	N	L	N	R	E	E	S	I	L	K	F	F	E	I	L	S	P	V	Y	R	F
-	-	-	-	-	-	-	-	D	V	S	E	E	L	I	Q	D	I	T	Q	R	L	F	F	L	Q	V	K	E	G	I	L	N	D	D	I	-	Y	C	P	P	E	T	A	V	L	L	A	S	Y	A	V	Q	S	K	Y	G	D	F	N	-	-	V	H	S	-	-	-	-	-	G	Y	L	A	-	-	-	-	G	D	K	L	L	P	Q	R	V	L	E	Q	H	K	L	N	K	D	Q	W	E	E	R	I	Q	V	W	H	E	E	H	R	G	M	L	R	E	D	A	V	L	E	Y	L	K	I	A	Q	D	L	-	-	-
-	-	-	-	-	-	-	P	D	P	A	Q	-	L	S	E	D	I	T	R	Y	Y	L	C	L	Q	L	R	D	D	I	V	S	G	R	L	-	P	C	S	F	V	T	L	A	L	L	G	S	Y	T	V	Q	S	E	L	G	D	Y	D	P	D	E	C	G	-	-	-	-	S	D	Y	I	S	-	-	-	-	E	F	R	F	A	P	-	-	N	H	-	-	-	-	-	-	T	K	E	L	E	D	K	V	I	E	L	H	K	S	H	R	G	M	T	P	A	E	A	E	M	H	F	L	E	N	A	K	K	L	S	M	Y

									10										20										30										40										50										60										70										80										90										100										110										120										130
M	K	F	F	Y	S	D	Q	N	V	D	S	-	R	-	D	P	V	Q	L	N	L	L	Y	V	Q	A	R	D	D	I	L	N	G	S	H	-	P	V	S	F	D	K	A	C	E	F	A	G	Y	Q	C	Q	I	Q	F	G	P	H	N	E	Q	K	H	K	-	-	-	-	P	G	F	L	E	-	-	-	-	L	K	D	F	L	P	K	E	Y	I	-	-	-	-	-	-	K	Q	K	G	E	R	K	I	F	M	A	H	K	N	C	G	N	M	S	E	I	E	A	K	V	R	Y	V	K	L	A	R	S	L	K	T	Y
-	-	-	-	-	-	K	G	F	L	N	Q	F	T	E	D	K	P	T	L	N	F	F	Y	Q	Q	V	K	N	D	Y	M	L	E	I	A	D	Q	V	D	Q	E	I	A	L	K	L	G	C	L	E	I	R	R	S	Y	G	E	M	R	G	N	A	L	E	K	K	S	N	Y	E	V	L	E	K	D	V	G	L	R	R	F	F	P	K	S	L	L	D	S	V	K	-	-	A	K	T	L	R	K	L	I	Q	Q	T	F	R	Q	F	A	N	L	N	R	E	E	S	I	L	K	F	F	E	I	L	S	P	V	Y	R	F
-	-	-	-	-	-	-	-	D	V	S	E	E	L	I	Q	D	I	T	Q	R	L	F	F	L	Q	V	K	E	G	I	L	N	D	D	I	-	Y	C	P	P	E	T	A	V	L	L	A	S	Y	A	V	Q	S	K	Y	G	D	F	N	-	-	V	H	S	-	-	-	-	-	G	Y	L	A	-	-	-	-	G	D	K	L	L	P	Q	R	V	L	E	Q	H	K	L	N	K	D	Q	W	E	E	R	I	Q	V	W	H	E	E	H	R	G	M	L	R	E	D	A	V	L	E	Y	L	K	I	A	Q	D	L	-	-	-
-	-	-	-	-	-	-	P	D	P	A	Q	-	L	S	E	D	I	T	R	Y	Y	L	C	L	Q	L	R	D	D	I	V	S	G	R	L	-	P	C	S	F	V	T	L	A	L	L	G	S	Y	T	V	Q	S	E	L	G	D	Y	D	P	D	E	C	G	-	-	-	-	S	D	Y	I	S	-	-	-	-	E	F	R	F	A	P	-	-	N	H	-	-	-	-	-	-	T	K	E	L	E	D	K	V	I	E	L	H	K	S	H	R	G	M	T	P	A	E	A	E	M	H	F	L	E	N	A	K	K	L	S	M	Y

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M	K	F	F	Y	S	D	Q	N	V	D	S	-	R	-	D	P	V	Q	L	N	L	L	Y	V	Q	A	R	D	D	I	L	N	G	S	H	-	P	V	S	F	D	K	A	C	E	F	A	G	Y	Q	C	Q	I	Q	F	G	P	H	N	E	Q	K	H	K	-	-	-	-	P	G	F	L	E	-	-	-	-	L	K	D	F	L	P	K	E	Y	I	-	-	-	-	-	-	K	Q	K	G	E	R	K	I	F	M	A	H	K	N	C	G	N	M	S	E	I	E	A	K	V	R	Y	V	K	L	A	R	S	L	K	T	Y
-	-	-	-	-	-	K	G	F	L	N	Q	F	T	E	D	K	P	T	L	N	F	F	Y	Q	Q	V	K	N	D	Y	M	L	E	I	A	D	Q	V	D	Q	E	I	A	L	K	L	G	C	L	E	I	R	R	S	Y	G	E	M	R	G	N	A	L	E	K	K	S	N	Y	E	V	L	E	K	D	V	G	L	R	R	F	F	P	K	S	L	L	D	S	V	K	-	-	A	K	T	L	R	K	L	I	Q	Q	T	F	R	Q	F	A	N	L	N	R	E	E	S	I	L	K	F	F	E	I	L	S	P	V	Y	R	F
-	-	-	-	-	-	-	-	D	V	S	E	E	L	I	Q	D	I	T	Q	R	L	F	F	L	Q	V	K	E	G	I	L	N	D	D	I	-	Y	C	P	P	E	T	A	V	L	L	A	S	Y	A	V	Q	S	K	Y	G	D	F	N	-	-	V	H	S	-	-	-	-	-	G	Y	L	A	-	-	-	-	G	D	K	L	L	P	Q	R	V	L	E	Q	H	K	L	N	K	D	Q	W	E	E	R	I	Q	V	W	H	E	E	H	R	G	M	L	R	E	D	A	V	L	E	Y	L	K	I	A	Q	D	L	-	-	-
-	-	-	-	-	-	-	P	D	P	A	Q	-	L	S	E	D	I	T	R	Y	Y	L	C	L	Q	L	R	D	D	I	V	S	G	R	L	-	P	C	S	F	V	T	L	A	L	L	G	S	Y	T	V	Q	S	E	L	G	D	Y	D	P	D	E	C	G	-	-	-	-	S	D	Y	I	S	-	-	-	-	E	F	R	F	A	P	-	-	N	H	-	-	-	-	-	-	T	K	E	L	E	D	K	V	I	E	L	H	K	S	H	R	G	M	T	P	A	E	A	E	M	H	F	L	E	N	A	K	K	L	S	M	Y