PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40    
d1w4ha-  ( 126 )    qnndalspairrllaehnldAsaikGtgvggrltredvekhlaka
d2eq9c-  ( 129 )       mlAvpaArklArelgipieeVpGsgplgrVrvedVaya    
                           aaaaaaaaa    333

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1w4ha- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1w4ha- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	Escherichia coli [TaxId: 562]		view
d2eq9c- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2eq9c- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Thermus thermophilus [TaxId: 300852]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Q	N	N	D	A	L	S	P	A	I	R	R	L	L	A	E	H	N	L	D	A	S	A	I	K	G	T	G	V	G	G	R	L	T	R	E	D	V	E	K	H	L	A	K	A
-	-	-	M	L	A	V	P	A	A	R	K	L	A	R	E	L	G	I	P	I	E	E	V	P	G	S	G	P	L	G	R	V	R	V	E	D	V	A	Y	A	-	-	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40
Q	N	N	D	A	L	S	P	A	I	R	R	L	L	A	E	H	N	L	D	A	S	A	I	K	G	T	G	V	G	G	R	L	T	R	E	D	V	E	K	H	L	A	K	A
-	-	-	M	L	A	V	P	A	A	R	K	L	A	R	E	L	G	I	P	I	E	E	V	P	G	S	G	P	L	G	R	V	R	V	E	D	V	A	Y	A	-	-	-	-

									10										20										30										40
Q	N	N	D	A	L	S	P	A	I	R	R	L	L	A	E	H	N	L	D	A	S	A	I	K	G	T	G	V	G	G	R	L	T	R	E	D	V	E	K	H	L	A	K	A
-	-	-	M	L	A	V	P	A	A	R	K	L	A	R	E	L	G	I	P	I	E	E	V	P	G	S	G	P	L	G	R	V	R	V	E	D	V	A	Y	A	-	-	-	-

									10										20										30										40
Q	N	N	D	A	L	S	P	A	I	R	R	L	L	A	E	H	N	L	D	A	S	A	I	K	G	T	G	V	G	G	R	L	T	R	E	D	V	E	K	H	L	A	K	A
-	-	-	M	L	A	V	P	A	A	R	K	L	A	R	E	L	G	I	P	I	E	E	V	P	G	S	G	P	L	G	R	V	R	V	E	D	V	A	Y	A	-	-	-	-