PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d1eija-  (   1 )                        mrqqlemqkkqimm---qiltpeArsrlan
d2crua1  (   8 )    lrrqrlaelqakhgdpgdaaqqeakhreaemrnsilaqvldqsArarlsn
                                                 aaaaa   aa  aaaaaaaaa

                             60        70        80        90        100 
d1eija-  (  28 )    lrltrpdFveqielqliqlaqmgrvrSKitdeqlkellkrva--gkk   
d2crua1  (  58 )    lalvkpektkavenyliqmarygqlsekvseqglieilkkvsqqtekttt
                    a    aaaaaaaaaaaaaaaaa        aaaaaaaaaaa         

                         
d1eija-                  
d2crua1  ( 108 )    vkfnr

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1eija- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1eija- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Hypothetical protein MTH1615	Double-stranded DNA-binding domain	Methanobacterium thermoautotrophicum [TaxId: 145262]		view
d2crua1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2crua1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Programmed cell death protein 5	Double-stranded DNA-binding domain	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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L	R	R	Q	R	L	A	E	L	Q	A	K	H	G	D	P	G	D	A	A	Q	Q	E	A	K	H	R	E	A	E	M	R	N	S	I	L	A	Q	V	L	D	Q	S	A	R	A	R	L	S	N	L	A	L	V	K	P	E	K	T	K	A	V	E	N	Y	L	I	Q	M	A	R	Y	G	Q	L	S	E	K	V	S	E	Q	G	L	I	E	I	L	K	K	V	S	Q	Q	T	E	K	T	T	T	V	K	F	N	R

Member	Chain	UniProtKB	GO term
d1eija_	A	O27652	GO:0003677
d2crua1	A	O14737	GO:0003677

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