PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1r5la1  (  25 )                              qpglaaLrrrAreagvplaplplt
d4uyba1  (   1 )                  msGrvgdlspkqaetlakFrenVqdv-lpaLpn-pd
d6slda1  (   4 )    sildtypqicspnalpGtPgnltkeqeeallqFrsillek--nyker-ld
                                                 aaaaaaaa             

                             60        70        80        90     
d1r5la1  (  49 )    dsFLlrfLrardfdldlAwrlLknyykwraecpeisadlhpr    
d4uyba1  (  35 )    dyfLLrwLrarnfdlqkSealLrkymefrktm--didhildwq   
d6slda1  (  51 )    dstllrflrarkfdinaSvemFveterwreey--gantiiedyenn
                    aaaaaaaaaa    aaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1r5la1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1r5la1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Alpha-tocopherol transfer protein	CRAL/TRIO N-terminal domain	Human (Homo sapiens) [TaxId: 9606]	view
d4uyba1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4uyba1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view
d6slda1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6slda1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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Member	Chain	UniProtKB	GO term
d1r5la1	A	P49638	GO:0001890
d1r5la1	A	P49638	GO:0001892
d1r5la1	A	P49638	GO:0005515
d1r5la1	A	P49638	GO:0005546
d1r5la1	A	P49638	GO:0005737
d1r5la1	A	P49638	GO:0005770
d1r5la1	A	P49638	GO:0005829
d1r5la1	A	P49638	GO:0006629
d1r5la1	A	P49638	GO:0008289
d1r5la1	A	P49638	GO:0008431
d1r5la1	A	P49638	GO:0009636
d1r5la1	A	P49638	GO:0042360
d1r5la1	A	P49638	GO:0043325
d1r5la1	A	P49638	GO:0051180
d1r5la1	A	P49638	GO:0090212
d1r5la1	A	P49638	GO:0120009
d1r5la1	A	P49638	GO:0120013
d1r5la1	A	P49638	GO:1900223
d1r5la1	A	P49638	GO:1902936
d1r5la1	A	P49638	GO:0001890
d1r5la1	A	P49638	GO:0001892
d1r5la1	A	P49638	GO:0005515
d1r5la1	A	P49638	GO:0005546
d1r5la1	A	P49638	GO:0005737
d1r5la1	A	P49638	GO:0005770
d1r5la1	A	P49638	GO:0005829
d1r5la1	A	P49638	GO:0006629
d1r5la1	A	P49638	GO:0008289
d1r5la1	A	P49638	GO:0008431
d1r5la1	A	P49638	GO:0009636
d1r5la1	A	P49638	GO:0042360
d1r5la1	A	P49638	GO:0043325
d1r5la1	A	P49638	GO:0051180
d1r5la1	A	P49638	GO:0090212
d1r5la1	A	P49638	GO:0120009
d1r5la1	A	P49638	GO:0120013
d1r5la1	A	P49638	GO:1900223
d1r5la1	A	P49638	GO:1902936

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