PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1e3pa1  ( 263 )          yqddVleaLsaAVrpeLsaALt--iagkqdreaeldrVkalAae
d1whua1  ( 274 )    pqkiftPsaeivkytkiiAmeklyavFtdyehdkvsrdeavnkirldtee
                            aaaaaaaaaaaaaaaaaa            aaaaaaaaaaa 

                             60        70        80        90    
d1e3pa1  ( 305 )    kLlpefeg-rekeisaAYraLtkslvrerviaekkridgrgv   
d1whua1  ( 324 )    hlkekfpevdqfeiieSFnivakevfrsiilneyk----rcdgrd
                              aaaaaaaaaaaaaaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d1e3pa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1e3pa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	Streptomyces antibioticus [TaxId: 1890]		view
d1whua1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1whua1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3	Mouse (Mus musculus) [TaxId: 10090]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	Q	K	I	F	T	P	S	A	E	I	V	K	Y	T	K	I	I	A	M	E	K	L	Y	A	V	F	T	D	Y	E	H	D	K	V	S	R	D	E	A	V	N	K	I	R	L	D	T	E	E	H	L	K	E	K	F	P	E	V	D	Q	F	E	I	I	E	S	F	N	I	V	A	K	E	V	F	R	S	I	I	L	N	E	Y	K	-	-	-	-	R	C	D	G	R	D

Member	Chain	UniProtKB	GO term
d1e3pa1	A	Q53597	GO:0000175
d1e3pa1	A	Q53597	GO:0000287
d1e3pa1	A	Q53597	GO:0003676
d1e3pa1	A	Q53597	GO:0003723
d1e3pa1	A	Q53597	GO:0004654
d1e3pa1	A	Q53597	GO:0005737
d1e3pa1	A	Q53597	GO:0005829
d1e3pa1	A	Q53597	GO:0006396
d1e3pa1	A	Q53597	GO:0006401
d1e3pa1	A	Q53597	GO:0006402
d1e3pa1	A	Q53597	GO:0016779
d1e3pa1	A	Q53597	GO:0046872
d1e3pa1	A	Q53597	GO:0000175
d1e3pa1	A	Q53597	GO:0000287
d1e3pa1	A	Q53597	GO:0003676
d1e3pa1	A	Q53597	GO:0003723
d1e3pa1	A	Q53597	GO:0004654
d1e3pa1	A	Q53597	GO:0005737
d1e3pa1	A	Q53597	GO:0005829
d1e3pa1	A	Q53597	GO:0006396
d1e3pa1	A	Q53597	GO:0006401
d1e3pa1	A	Q53597	GO:0006402
d1e3pa1	A	Q53597	GO:0016779
d1e3pa1	A	Q53597	GO:0046872
d1e3pa1	A	Q53597	GO:0000175
d1e3pa1	A	Q53597	GO:0000287
d1e3pa1	A	Q53597	GO:0003676
d1e3pa1	A	Q53597	GO:0003723
d1e3pa1	A	Q53597	GO:0004654
d1e3pa1	A	Q53597	GO:0005737
d1e3pa1	A	Q53597	GO:0005829
d1e3pa1	A	Q53597	GO:0006396
d1e3pa1	A	Q53597	GO:0006401
d1e3pa1	A	Q53597	GO:0006402
d1e3pa1	A	Q53597	GO:0016779
d1e3pa1	A	Q53597	GO:0046872
d1e3pa1	A	Q53597	GO:0000175
d1e3pa1	A	Q53597	GO:0000287
d1e3pa1	A	Q53597	GO:0003676
d1e3pa1	A	Q53597	GO:0003723
d1e3pa1	A	Q53597	GO:0004654
d1e3pa1	A	Q53597	GO:0005737
d1e3pa1	A	Q53597	GO:0005829
d1e3pa1	A	Q53597	GO:0006396
d1e3pa1	A	Q53597	GO:0006401
d1e3pa1	A	Q53597	GO:0006402
d1e3pa1	A	Q53597	GO:0016779
d1e3pa1	A	Q53597	GO:0046872

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