PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d6uxeb-  (   2 )                    aassraqvlalyraMlreSkrfs----aynyrty
d6yj4w-  (   2 )    aiiatafaetvkfSgskqeLqkrtlaLyrqflrgAptFadlYeVqfsipt
d6zk9g-  (  14 )    t------svkpifSrdmneAkrrvreLyrawyrevpntvhlFqLdIsvkq
                                       aaaaaaaaaaaaaaaa            aaa

                             60        70        80        90        100 
d6uxeb-  (  32 )    avrri-dafr-nknv-dpveiqtlVn-akrdlgvirr----qVhigql--
d6yj4w-  (  52 )    IrtkirqeferhrfvddlsiqNvlyakghmeYqeCinfwkqqaqFlkyFp
d6zk9g-  (  58 )    grdkvremfkknahvtdprvvDllVikgkmeleeTinvwkqrthvmrffh
                    aaaa             aaaaaaaa   aaaaaaaa     aaaa     

                             110       120  
d6uxeb-  (  76 )    --yst-----dkliie        
d6yj4w-  ( 102 )    eeddiqgrhqpsnfvdkflknra 
d6zk9g-  ( 108 )    e----teaprpkdflskfyvghdp

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d6uxeb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6uxeb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	LYR motif-containing protein 4	LYR proteins	Human (Homo sapiens) [TaxId: 9606]	view
d6yj4w- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6yj4w- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Yarrowia lipolytica [TaxId: 4952]	view
d6zk9g- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6zk9g- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	LYR proteins	Sheep (Ovis aries) [TaxId: 9940]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	A	A	S	S	R	A	Q	V	L	A	L	Y	R	A	M	L	R	E	S	K	R	F	S	-	-	-	-	A	Y	N	Y	R	T	Y	A	V	R	R	I	-	D	A	F	R	-	N	K	N	V	-	D	P	V	E	I	Q	T	L	V	N	-	A	K	R	D	L	G	V	I	R	R	-	-	-	-	Q	V	H	I	G	Q	L	-	-	-	-	Y	S	T	-	-	-	-	-	D	K	L	I	I	E	-	-	-	-	-	-	-	-
A	I	I	A	T	A	F	A	E	T	V	K	F	S	G	S	K	Q	E	L	Q	K	R	T	L	A	L	Y	R	Q	F	L	R	G	A	P	T	F	A	D	L	Y	E	V	Q	F	S	I	P	T	I	R	T	K	I	R	Q	E	F	E	R	H	R	F	V	D	D	L	S	I	Q	N	V	L	Y	A	K	G	H	M	E	Y	Q	E	C	I	N	F	W	K	Q	Q	A	Q	F	L	K	Y	F	P	E	E	D	D	I	Q	G	R	H	Q	P	S	N	F	V	D	K	F	L	K	N	R	A	-
T	-	-	-	-	-	-	S	V	K	P	I	F	S	R	D	M	N	E	A	K	R	R	V	R	E	L	Y	R	A	W	Y	R	E	V	P	N	T	V	H	L	F	Q	L	D	I	S	V	K	Q	G	R	D	K	V	R	E	M	F	K	K	N	A	H	V	T	D	P	R	V	V	D	L	L	V	I	K	G	K	M	E	L	E	E	T	I	N	V	W	K	Q	R	T	H	V	M	R	F	F	H	E	-	-	-	-	T	E	A	P	R	P	K	D	F	L	S	K	F	Y	V	G	H	D	P

Member	Chain	UniProtKB	GO term

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A	I	I	A	T	A	F	A	E	T	V	K	F	S	G	S	K	Q	E	L	Q	K	R	T	L	A	L	Y	R	Q	F	L	R	G	A	P	T	F	A	D	L	Y	E	V	Q	F	S	I	P	T	I	R	T	K	I	R	Q	E	F	E	R	H	R	F	V	D	D	L	S	I	Q	N	V	L	Y	A	K	G	H	M	E	Y	Q	E	C	I	N	F	W	K	Q	Q	A	Q	F	L	K	Y	F	P	E	E	D	D	I	Q	G	R	H	Q	P	S	N	F	V	D	K	F	L	K	N	R	A	-
T	-	-	-	-	-	-	S	V	K	P	I	F	S	R	D	M	N	E	A	K	R	R	V	R	E	L	Y	R	A	W	Y	R	E	V	P	N	T	V	H	L	F	Q	L	D	I	S	V	K	Q	G	R	D	K	V	R	E	M	F	K	K	N	A	H	V	T	D	P	R	V	V	D	L	L	V	I	K	G	K	M	E	L	E	E	T	I	N	V	W	K	Q	R	T	H	V	M	R	F	F	H	E	-	-	-	-	T	E	A	P	R	P	K	D	F	L	S	K	F	Y	V	G	H	D	P

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A	I	I	A	T	A	F	A	E	T	V	K	F	S	G	S	K	Q	E	L	Q	K	R	T	L	A	L	Y	R	Q	F	L	R	G	A	P	T	F	A	D	L	Y	E	V	Q	F	S	I	P	T	I	R	T	K	I	R	Q	E	F	E	R	H	R	F	V	D	D	L	S	I	Q	N	V	L	Y	A	K	G	H	M	E	Y	Q	E	C	I	N	F	W	K	Q	Q	A	Q	F	L	K	Y	F	P	E	E	D	D	I	Q	G	R	H	Q	P	S	N	F	V	D	K	F	L	K	N	R	A	-
T	-	-	-	-	-	-	S	V	K	P	I	F	S	R	D	M	N	E	A	K	R	R	V	R	E	L	Y	R	A	W	Y	R	E	V	P	N	T	V	H	L	F	Q	L	D	I	S	V	K	Q	G	R	D	K	V	R	E	M	F	K	K	N	A	H	V	T	D	P	R	V	V	D	L	L	V	I	K	G	K	M	E	L	E	E	T	I	N	V	W	K	Q	R	T	H	V	M	R	F	F	H	E	-	-	-	-	T	E	A	P	R	P	K	D	F	L	S	K	F	Y	V	G	H	D	P

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A	I	I	A	T	A	F	A	E	T	V	K	F	S	G	S	K	Q	E	L	Q	K	R	T	L	A	L	Y	R	Q	F	L	R	G	A	P	T	F	A	D	L	Y	E	V	Q	F	S	I	P	T	I	R	T	K	I	R	Q	E	F	E	R	H	R	F	V	D	D	L	S	I	Q	N	V	L	Y	A	K	G	H	M	E	Y	Q	E	C	I	N	F	W	K	Q	Q	A	Q	F	L	K	Y	F	P	E	E	D	D	I	Q	G	R	H	Q	P	S	N	F	V	D	K	F	L	K	N	R	A	-
T	-	-	-	-	-	-	S	V	K	P	I	F	S	R	D	M	N	E	A	K	R	R	V	R	E	L	Y	R	A	W	Y	R	E	V	P	N	T	V	H	L	F	Q	L	D	I	S	V	K	Q	G	R	D	K	V	R	E	M	F	K	K	N	A	H	V	T	D	P	R	V	V	D	L	L	V	I	K	G	K	M	E	L	E	E	T	I	N	V	W	K	Q	R	T	H	V	M	R	F	F	H	E	-	-	-	-	T	E	A	P	R	P	K	D	F	L	S	K	F	Y	V	G	H	D	P