PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4uw2a5  ( 425 )          nlp--kllGfgrtakndagvlvegp-fsGfvpyp-------vge
d6ifka5  ( 422 )    crglyqfskeiahdhfIiTe----neglpigpnaclkGVafeklsqeafs
                                  bbbbb               bbbbb           

                             60        70        80        90  
d4uw2a5  ( 464 )    qIlvkntlnpgeipesAqfvpyfvadyfkkdpkg       
d6ifka5  ( 468 )    rvyVkndyag-------kathvf-gdyqcdeiynyaalskn
                    bbbbb              bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4uw2a5 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4uw2a5 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	CRISPR-Cas type III-A interference complex protein Csm1	B domain from Cmr1	Thermococcus onnurineus NA1 [TaxId: 523850]		view
d6ifka5 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6ifka5 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	CRISPR-Cas type III-A interference complex protein Csm1	B domain from Cmr1	Streptococcus thermophilus ND03 [TaxId: 767463]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
-	-	-	-	-	-	N	L	P	-	-	K	L	L	G	F	G	R	T	A	K	N	D	A	G	V	L	V	E	G	P	-	F	S	G	F	V	P	Y	P	-	-	-	-	-	-	-	V	G	E	Q	I	L	V	K	N	T	L	N	P	G	E	I	P	E	S	A	Q	F	V	P	Y	F	V	A	D	Y	F	K	K	D	P	K	G	-	-	-	-	-	-	-
C	R	G	L	Y	Q	F	S	K	E	I	A	H	D	H	F	I	I	T	E	-	-	-	-	N	E	G	L	P	I	G	P	N	A	C	L	K	G	V	A	F	E	K	L	S	Q	E	A	F	S	R	V	Y	V	K	N	D	Y	A	G	-	-	-	-	-	-	-	K	A	T	H	V	F	-	G	D	Y	Q	C	D	E	I	Y	N	Y	A	A	L	S	K	N

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90
-	-	-	-	-	-	N	L	P	-	-	K	L	L	G	F	G	R	T	A	K	N	D	A	G	V	L	V	E	G	P	-	F	S	G	F	V	P	Y	P	-	-	-	-	-	-	-	V	G	E	Q	I	L	V	K	N	T	L	N	P	G	E	I	P	E	S	A	Q	F	V	P	Y	F	V	A	D	Y	F	K	K	D	P	K	G	-	-	-	-	-	-	-
C	R	G	L	Y	Q	F	S	K	E	I	A	H	D	H	F	I	I	T	E	-	-	-	-	N	E	G	L	P	I	G	P	N	A	C	L	K	G	V	A	F	E	K	L	S	Q	E	A	F	S	R	V	Y	V	K	N	D	Y	A	G	-	-	-	-	-	-	-	K	A	T	H	V	F	-	G	D	Y	Q	C	D	E	I	Y	N	Y	A	A	L	S	K	N

									10										20										30										40										50										60										70										80										90
-	-	-	-	-	-	N	L	P	-	-	K	L	L	G	F	G	R	T	A	K	N	D	A	G	V	L	V	E	G	P	-	F	S	G	F	V	P	Y	P	-	-	-	-	-	-	-	V	G	E	Q	I	L	V	K	N	T	L	N	P	G	E	I	P	E	S	A	Q	F	V	P	Y	F	V	A	D	Y	F	K	K	D	P	K	G	-	-	-	-	-	-	-
C	R	G	L	Y	Q	F	S	K	E	I	A	H	D	H	F	I	I	T	E	-	-	-	-	N	E	G	L	P	I	G	P	N	A	C	L	K	G	V	A	F	E	K	L	S	Q	E	A	F	S	R	V	Y	V	K	N	D	Y	A	G	-	-	-	-	-	-	-	K	A	T	H	V	F	-	G	D	Y	Q	C	D	E	I	Y	N	Y	A	A	L	S	K	N

									10										20										30										40										50										60										70										80										90
-	-	-	-	-	-	N	L	P	-	-	K	L	L	G	F	G	R	T	A	K	N	D	A	G	V	L	V	E	G	P	-	F	S	G	F	V	P	Y	P	-	-	-	-	-	-	-	V	G	E	Q	I	L	V	K	N	T	L	N	P	G	E	I	P	E	S	A	Q	F	V	P	Y	F	V	A	D	Y	F	K	K	D	P	K	G	-	-	-	-	-	-	-
C	R	G	L	Y	Q	F	S	K	E	I	A	H	D	H	F	I	I	T	E	-	-	-	-	N	E	G	L	P	I	G	P	N	A	C	L	K	G	V	A	F	E	K	L	S	Q	E	A	F	S	R	V	Y	V	K	N	D	Y	A	G	-	-	-	-	-	-	-	K	A	T	H	V	F	-	G	D	Y	Q	C	D	E	I	Y	N	Y	A	A	L	S	K	N