PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d5ybya-  ( 177 )     esmitsignpvqvlkvtetfGtWirESank-sddriWvtehfs-gimvk
d6qhja-  ( 226 )    açgkltgisdPvtvktsgsrfGSWMtdPlapegdnrvWYMdgyhnnrfvr
                        bbbb   bbbbb     bbbb           bbbbb      bbb

                             60        70        80        90        100 
d5ybya-  ( 224 )    eFkdqpslln-gsytfihlpyyFhGCgHvvynnSlYYHkggsntlvrFeF
d6qhja-  ( 276 )    EYksmvdFmntdnftshrlphpWsGtgqvvyngSiYFnkfqshiiirFdl
                    bb  aaaaaa    bbbb          bbb  bbbbb     bbbbbb 

                             110       120       130       140       150 
d5ybya-  ( 273 )    gqet-sqtlklenAlyfdrkylFan-SktYFnlavDekglWiiYASsvdg
d6qhja-  ( 326 )    ktetilktrsldyAgy-nnmyhYaWgGhSDiDlMvDenglWAvYAtnqna
                         bbbbb                     bbbbb  bbbbbbb     

                             160       170       180       190       200 
d5ybya-  ( 321 )    ssilvAqldertFsvvqhvnttypkskAGnAFiArgilYvtdtkD--mrv
d6qhja-  ( 375 )    gniviSkldpvslqilqtwntsYpKrsAGEAFiiÇgtlYvtngysggtkv
                     bbbbbbb      bbbbbbbbbb333   bbbb  bbbbb       bb

                             210       220       230       240       250 
d5ybya-  ( 369 )    tFAFdllggkqinanfdlRtsqsvlAMlaYnmrdqhlYSWEdGhlmlYpv
d6qhja-  ( 425 )    hYAYqtnastyeyidipFqnkysHiSMldYnpkdrAlYAWnnghqtlYnv
                    bbbbb    bbb   bb       bbbbbbb    bbbbbb  bbbbbbb

                       
d5ybya-  ( 419 )    qfl
d6qhja-  ( 475 )    tlf
                    bb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d5ybya- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5ybya- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	OLF domain of olfactomedins	Human (Homo sapiens) [TaxId: 9606]		view
d6qhja- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6qhja- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	E	S	M	I	T	S	I	G	N	P	V	Q	V	L	K	V	T	E	T	F	G	T	W	I	R	E	S	A	N	K	-	S	D	D	R	I	W	V	T	E	H	F	S	-	G	I	M	V	K	E	F	K	D	Q	P	S	L	L	N	-	G	S	Y	T	F	I	H	L	P	Y	Y	F	H	G	C	G	H	V	V	Y	N	N	S	L	Y	Y	H	K	G	G	S	N	T	L	V	R	F	E	F	G	Q	E	T	-	S	Q	T	L	K	L	E	N	A	L	Y	F	D	R	K	Y	L	F	A	N	-	S	K	T	Y	F	N	L	A	V	D	E	K	G	L	W	I	I	Y	A	S	S	V	D	G	S	S	I	L	V	A	Q	L	D	E	R	T	F	S	V	V	Q	H	V	N	T	T	Y	P	K	S	K	A	G	N	A	F	I	A	R	G	I	L	Y	V	T	D	T	K	D	-	-	M	R	V	T	F	A	F	D	L	L	G	G	K	Q	I	N	A	N	F	D	L	R	T	S	Q	S	V	L	A	M	L	A	Y	N	M	R	D	Q	H	L	Y	S	W	E	D	G	H	L	M	L	Y	P	V	Q	F	L
A	C	G	K	L	T	G	I	S	D	P	V	T	V	K	T	S	G	S	R	F	G	S	W	M	T	D	P	L	A	P	E	G	D	N	R	V	W	Y	M	D	G	Y	H	N	N	R	F	V	R	E	Y	K	S	M	V	D	F	M	N	T	D	N	F	T	S	H	R	L	P	H	P	W	S	G	T	G	Q	V	V	Y	N	G	S	I	Y	F	N	K	F	Q	S	H	I	I	I	R	F	D	L	K	T	E	T	I	L	K	T	R	S	L	D	Y	A	G	Y	-	N	N	M	Y	H	Y	A	W	G	G	H	S	D	I	D	L	M	V	D	E	N	G	L	W	A	V	Y	A	T	N	Q	N	A	G	N	I	V	I	S	K	L	D	P	V	S	L	Q	I	L	Q	T	W	N	T	S	Y	P	K	R	S	A	G	E	A	F	I	I	C	G	T	L	Y	V	T	N	G	Y	S	G	G	T	K	V	H	Y	A	Y	Q	T	N	A	S	T	Y	E	Y	I	D	I	P	F	Q	N	K	Y	S	H	I	S	M	L	D	Y	N	P	K	D	R	A	L	Y	A	W	N	N	G	H	Q	T	L	Y	N	V	T	L	F

Member	Chain	UniProtKB	GO term

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A	C	G	K	L	T	G	I	S	D	P	V	T	V	K	T	S	G	S	R	F	G	S	W	M	T	D	P	L	A	P	E	G	D	N	R	V	W	Y	M	D	G	Y	H	N	N	R	F	V	R	E	Y	K	S	M	V	D	F	M	N	T	D	N	F	T	S	H	R	L	P	H	P	W	S	G	T	G	Q	V	V	Y	N	G	S	I	Y	F	N	K	F	Q	S	H	I	I	I	R	F	D	L	K	T	E	T	I	L	K	T	R	S	L	D	Y	A	G	Y	-	N	N	M	Y	H	Y	A	W	G	G	H	S	D	I	D	L	M	V	D	E	N	G	L	W	A	V	Y	A	T	N	Q	N	A	G	N	I	V	I	S	K	L	D	P	V	S	L	Q	I	L	Q	T	W	N	T	S	Y	P	K	R	S	A	G	E	A	F	I	I	C	G	T	L	Y	V	T	N	G	Y	S	G	G	T	K	V	H	Y	A	Y	Q	T	N	A	S	T	Y	E	Y	I	D	I	P	F	Q	N	K	Y	S	H	I	S	M	L	D	Y	N	P	K	D	R	A	L	Y	A	W	N	N	G	H	Q	T	L	Y	N	V	T	L	F

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-	E	S	M	I	T	S	I	G	N	P	V	Q	V	L	K	V	T	E	T	F	G	T	W	I	R	E	S	A	N	K	-	S	D	D	R	I	W	V	T	E	H	F	S	-	G	I	M	V	K	E	F	K	D	Q	P	S	L	L	N	-	G	S	Y	T	F	I	H	L	P	Y	Y	F	H	G	C	G	H	V	V	Y	N	N	S	L	Y	Y	H	K	G	G	S	N	T	L	V	R	F	E	F	G	Q	E	T	-	S	Q	T	L	K	L	E	N	A	L	Y	F	D	R	K	Y	L	F	A	N	-	S	K	T	Y	F	N	L	A	V	D	E	K	G	L	W	I	I	Y	A	S	S	V	D	G	S	S	I	L	V	A	Q	L	D	E	R	T	F	S	V	V	Q	H	V	N	T	T	Y	P	K	S	K	A	G	N	A	F	I	A	R	G	I	L	Y	V	T	D	T	K	D	-	-	M	R	V	T	F	A	F	D	L	L	G	G	K	Q	I	N	A	N	F	D	L	R	T	S	Q	S	V	L	A	M	L	A	Y	N	M	R	D	Q	H	L	Y	S	W	E	D	G	H	L	M	L	Y	P	V	Q	F	L
A	C	G	K	L	T	G	I	S	D	P	V	T	V	K	T	S	G	S	R	F	G	S	W	M	T	D	P	L	A	P	E	G	D	N	R	V	W	Y	M	D	G	Y	H	N	N	R	F	V	R	E	Y	K	S	M	V	D	F	M	N	T	D	N	F	T	S	H	R	L	P	H	P	W	S	G	T	G	Q	V	V	Y	N	G	S	I	Y	F	N	K	F	Q	S	H	I	I	I	R	F	D	L	K	T	E	T	I	L	K	T	R	S	L	D	Y	A	G	Y	-	N	N	M	Y	H	Y	A	W	G	G	H	S	D	I	D	L	M	V	D	E	N	G	L	W	A	V	Y	A	T	N	Q	N	A	G	N	I	V	I	S	K	L	D	P	V	S	L	Q	I	L	Q	T	W	N	T	S	Y	P	K	R	S	A	G	E	A	F	I	I	C	G	T	L	Y	V	T	N	G	Y	S	G	G	T	K	V	H	Y	A	Y	Q	T	N	A	S	T	Y	E	Y	I	D	I	P	F	Q	N	K	Y	S	H	I	S	M	L	D	Y	N	P	K	D	R	A	L	Y	A	W	N	N	G	H	Q	T	L	Y	N	V	T	L	F

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-	E	S	M	I	T	S	I	G	N	P	V	Q	V	L	K	V	T	E	T	F	G	T	W	I	R	E	S	A	N	K	-	S	D	D	R	I	W	V	T	E	H	F	S	-	G	I	M	V	K	E	F	K	D	Q	P	S	L	L	N	-	G	S	Y	T	F	I	H	L	P	Y	Y	F	H	G	C	G	H	V	V	Y	N	N	S	L	Y	Y	H	K	G	G	S	N	T	L	V	R	F	E	F	G	Q	E	T	-	S	Q	T	L	K	L	E	N	A	L	Y	F	D	R	K	Y	L	F	A	N	-	S	K	T	Y	F	N	L	A	V	D	E	K	G	L	W	I	I	Y	A	S	S	V	D	G	S	S	I	L	V	A	Q	L	D	E	R	T	F	S	V	V	Q	H	V	N	T	T	Y	P	K	S	K	A	G	N	A	F	I	A	R	G	I	L	Y	V	T	D	T	K	D	-	-	M	R	V	T	F	A	F	D	L	L	G	G	K	Q	I	N	A	N	F	D	L	R	T	S	Q	S	V	L	A	M	L	A	Y	N	M	R	D	Q	H	L	Y	S	W	E	D	G	H	L	M	L	Y	P	V	Q	F	L
A	C	G	K	L	T	G	I	S	D	P	V	T	V	K	T	S	G	S	R	F	G	S	W	M	T	D	P	L	A	P	E	G	D	N	R	V	W	Y	M	D	G	Y	H	N	N	R	F	V	R	E	Y	K	S	M	V	D	F	M	N	T	D	N	F	T	S	H	R	L	P	H	P	W	S	G	T	G	Q	V	V	Y	N	G	S	I	Y	F	N	K	F	Q	S	H	I	I	I	R	F	D	L	K	T	E	T	I	L	K	T	R	S	L	D	Y	A	G	Y	-	N	N	M	Y	H	Y	A	W	G	G	H	S	D	I	D	L	M	V	D	E	N	G	L	W	A	V	Y	A	T	N	Q	N	A	G	N	I	V	I	S	K	L	D	P	V	S	L	Q	I	L	Q	T	W	N	T	S	Y	P	K	R	S	A	G	E	A	F	I	I	C	G	T	L	Y	V	T	N	G	Y	S	G	G	T	K	V	H	Y	A	Y	Q	T	N	A	S	T	Y	E	Y	I	D	I	P	F	Q	N	K	Y	S	H	I	S	M	L	D	Y	N	P	K	D	R	A	L	Y	A	W	N	N	G	H	Q	T	L	Y	N	V	T	L	F