Superfamily : 418749 [ Helical insert domain of RAG1 ]
Class : Membrane and cell surface proteins and peptides
Fold : Helical insert domain of RAG1
# of Members : 2
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d4wwxb3  ( 791 )          idAlhCdigNAaeFykIFqlEIgevykhpn--askeerkrwqat
d4wwxx-  (   2 )    sLqmVtVg------hnialIqpgF-sL-MnFdgqvFFFGQkgwpkr----
                                                                      

                             60        70        80        90        100 
d4wwxb3  ( 833 )    LdkhLrkrmnLkpim-------------rmngnfArkLMtqeTVdAVcel
d4wwxx-  (  40 )    ---sCpTGVFHFdikqnhLkLkpAiFsk----------------------
                                                                      

                             110       120       130       140       150 
d4wwxb3  ( 870 )    IpseeRheALreLMdLYlkMkpVWrsscPakecpeslcqYsfNsqrFael
d4wwxx-  (  65 )    -----------------------------------------dScyLpPLr
                                                                      

                             160       170       180       190       200 
d4wwxb3  ( 920 )    LstkFkyrYeg---------------------------------------
d4wwxx-  (  74 )    yPAtcsyhqyIIHGGktpnneLsdkIyiMsvacknnkkVtFrCtekdLvg
                                                                      

                             210       220       230       240       250 
d4wwxb3  ( 931 )    --------------------------------------------------
d4wwxx-  ( 132 )    dvPepRygHsIdvVysrgksmGVLFGGrSympstqrttekwnsvadclph
                                                                      

                             260       270       280       290       300 
d4wwxb3  ( 931 )    -----------------------------------kitnyFhkTlahVpe
d4wwxx-  ( 182 )    VfLIdFefgcAtsyiLpelqdglSfHVsiArndtVyIlGGhsla------
                                                                      

                             310       320       330       340       350 
d4wwxb3  ( 946 )    iierdgSIGawa                                      
d4wwxx-  ( 226 )    ----snirpanLyrIrVdlppaVnCtvlpisVSsAilTqtnndefVIVGG
                                                                      

                             360       370       380       390       400 
d4wwxb3                                                               
d4wwxx-  ( 277 )    yqlenqKRmvCslVsLgdntIeisemetpdWtsdIkhskiwfGsnMgnGt
                                                                      

                             410       420 
d4wwxb3                                 
d4wwxx-  ( 327 )    IFlGIpgamseafyFYtLrc
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Recombination-activating protein RAG1Helical insert domain of RAG1Mouse (Mus musculus) [TaxId: 10090]view
Recombination-activating protein RAG2Recombination-activating protein RAG2-likeMouse (Mus musculus) [TaxId: 10090]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420
- - - - - - I D A L H C D I G N A A E F Y K I F Q L E I G E V Y K H P N - - A S K E E R K R W Q A T L D K H L R K R M N L K P I M - - - - - - - - - - - - - R M N G N F A R K L M T Q E T V D A V C E L I P S E E R H E A L R E L M D L Y L K M K P V W R S S C P A K E C P E S L C Q Y S F N S Q R F A E L L S T K F K Y R Y E G - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - K I T N Y F H K T L A H V P E I I E R D G S I G A W A - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
S L Q M V T V G - - - - - - H N I A L I Q P G F - S L - M N F D G Q V F F F G Q K G W P K R - - - - - - - S C P T G V F H F D I K Q N H L K L K P A I F S K - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - D S C Y L P P L R Y P A T C S Y H Q Y I I H G G K T P N N E L S D K I Y I M S V A C K N N K K V T F R C T E K D L V G D V P E P R Y G H S I D V V Y S R G K S M G V L F G G R S Y M P S T Q R T T E K W N S V A D C L P H V F L I D F E F G C A T S Y I L P E L Q D G L S F H V S I A R N D T V Y I L G G H S L A - - - - - - - - - - S N I R P A N L Y R I R V D L P P A V N C T V L P I S V S S A I L T Q T N N D E F V I V G G Y Q L E N Q K R M V C S L V S L G D N T I E I S E M E T P D W T S D I K H S K I W F G S N M G N G T I F L G I P G A M S E A F Y F Y T L R C

 

 

 

 

 

Member Chain UniProtKB GO term
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in