PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2vy8a-  ( 537 )    geingpesvLVnTYqwIirnWe----tVkiqWsq-nptmLYnkmeFepFq
d5d9ac2  ( 558 )       rdektaItkgYeaLikrLGtgdndIpsLiakkdylsLYnLpeVklMa
                        aaaaaaaaaaaaaaa        aaaaaaa   aaaa     aaa 

                             60        70        80        90        100 
d2vy8a-  ( 582 )    slVpkairgqYSGfVrtlFqqmrdvlgtdttqIIKLLPFAAappeqsrmq
d5d9ac2  ( 605 )    plIrpnrkgvYSrvArklVstqvttghyslheliKVLPFTyfa-------
                           aaaaaaaaaaaaaa        aaaaaaa3333          

                             110       120       130       140       150 
d2vy8a-  ( 633 )    fssLtVnvgmrIlvrgnspVFnynkttkrLtIlgkdAgtLipdtsgvesa
d5d9ac2  ( 656 )    -rlffSn-dsfVepgvnnnVFswskadssKiYchgiairvplvv-Gdeh 
                                         bb      bb    bb             

                       
d2vy8a-  ( 690 )    vlg
d5d9ac2

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2vy8a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2vy8a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Polymerase basic protein 2, PB2	Influenza virus PB2 '627' domain	Influenza A virus [TaxId: 11320]		view
d5d9ac2 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5d9ac2 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Polymerase basic protein 2, PB2	Influenza virus PB2 '627' domain	Influenza C virus (strain c/johannesburg/1/1966) [TaxId: 100673]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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