PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4adya3  ( 754 )    tpttviGirgsdqaiPkfqnCyAedafsypkysskpykvdntrIlpqQSr
d4cr2z3  ( 910 )     pkfIlAlnd-egepIkVnVrvg-----------qpvlLnhgerAe----
                         bbb                                          

                             60        70        80        90  
d4adya3  ( 881 )    yIsfiddrFvpvrkfgnngvvvLrDrepkepvalietvrq
d4cr2z3  ( 965 )    letDe---yiSytshie-gvViLkkn-pdyreee      
                                       bbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4adya3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4adya3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Proteasome regulatory subunit Rpn2, C-terminal domain	Proteasome regulatory subunit Rpn2, C-terminal domain-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view
d4cr2z3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4cr2z3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Proteasome regulatory subunit Rpn1, C-terminal domain	Proteasome regulatory subunit Rpn2, C-terminal domain-like	Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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T	P	T	T	V	I	G	I	R	G	S	D	Q	A	I	P	K	F	Q	N	C	Y	A	E	D	A	F	S	Y	P	K	Y	S	S	K	P	Y	K	V	D	N	T	R	I	L	P	Q	Q	S	R	Y	I	S	F	I	D	D	R	F	V	P	V	R	K	F	G	N	N	G	V	V	V	L	R	D	R	E	P	K	E	P	V	A	L	I	E	T	V	R	Q
-	P	K	F	I	L	A	L	N	D	-	E	G	E	P	I	K	V	N	V	R	V	G	-	-	-	-	-	-	-	-	-	-	-	Q	P	V	L	L	N	H	G	E	R	A	E	-	-	-	-	L	E	T	D	E	-	-	-	Y	I	S	Y	T	S	H	I	E	-	G	V	V	I	L	K	K	N	-	P	D	Y	R	E	E	E	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90
T	P	T	T	V	I	G	I	R	G	S	D	Q	A	I	P	K	F	Q	N	C	Y	A	E	D	A	F	S	Y	P	K	Y	S	S	K	P	Y	K	V	D	N	T	R	I	L	P	Q	Q	S	R	Y	I	S	F	I	D	D	R	F	V	P	V	R	K	F	G	N	N	G	V	V	V	L	R	D	R	E	P	K	E	P	V	A	L	I	E	T	V	R	Q
-	P	K	F	I	L	A	L	N	D	-	E	G	E	P	I	K	V	N	V	R	V	G	-	-	-	-	-	-	-	-	-	-	-	Q	P	V	L	L	N	H	G	E	R	A	E	-	-	-	-	L	E	T	D	E	-	-	-	Y	I	S	Y	T	S	H	I	E	-	G	V	V	I	L	K	K	N	-	P	D	Y	R	E	E	E	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90
T	P	T	T	V	I	G	I	R	G	S	D	Q	A	I	P	K	F	Q	N	C	Y	A	E	D	A	F	S	Y	P	K	Y	S	S	K	P	Y	K	V	D	N	T	R	I	L	P	Q	Q	S	R	Y	I	S	F	I	D	D	R	F	V	P	V	R	K	F	G	N	N	G	V	V	V	L	R	D	R	E	P	K	E	P	V	A	L	I	E	T	V	R	Q
-	P	K	F	I	L	A	L	N	D	-	E	G	E	P	I	K	V	N	V	R	V	G	-	-	-	-	-	-	-	-	-	-	-	Q	P	V	L	L	N	H	G	E	R	A	E	-	-	-	-	L	E	T	D	E	-	-	-	Y	I	S	Y	T	S	H	I	E	-	G	V	V	I	L	K	K	N	-	P	D	Y	R	E	E	E	-	-	-	-	-	-

									10										20										30										40										50										60										70										80										90
T	P	T	T	V	I	G	I	R	G	S	D	Q	A	I	P	K	F	Q	N	C	Y	A	E	D	A	F	S	Y	P	K	Y	S	S	K	P	Y	K	V	D	N	T	R	I	L	P	Q	Q	S	R	Y	I	S	F	I	D	D	R	F	V	P	V	R	K	F	G	N	N	G	V	V	V	L	R	D	R	E	P	K	E	P	V	A	L	I	E	T	V	R	Q
-	P	K	F	I	L	A	L	N	D	-	E	G	E	P	I	K	V	N	V	R	V	G	-	-	-	-	-	-	-	-	-	-	-	Q	P	V	L	L	N	H	G	E	R	A	E	-	-	-	-	L	E	T	D	E	-	-	-	Y	I	S	Y	T	S	H	I	E	-	G	V	V	I	L	K	K	N	-	P	D	Y	R	E	E	E	-	-	-	-	-	-