PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d4rz9a-  (   1 )            man--rtvkdAhsih-gtnPqylvekiirtriyeskyWkeeC
d5f5ta-  (   4 )    pdthraderrFldergssGplapNglnpatIMekavrerIvesyfWkeqC
                                               333   aaaaaaaa  aaaaaa 

                             60        70        80        90        100 
d4rz9a-  (  40 )    fgltaelvvdkAme-lrfvGGvyggnikPtpFlCltlKMlqiqPekdiiv
d5f5ta-  (  54 )    fgVneadIvdrVvehVrfVgGvtgvtqkPspFLCLAFKLLqlaPgddiLk
                           aaaaa         bb    bb aaaaaaaaaaaa   aaaaa

                             110       120       130       140       150 
d4rz9a-  (  89 )    eFik--nedfkyvrMlGAlYMRltgtaidCYkyleplyndyrkiksqnrn
d5f5ta-  ( 104 )    eYLyfgGekfkyLRALAAFYIRLTRpDkeVYtlLepfledrrkLrrkgkn
                    aaaa      aaaaaaaaaaaaaa  aaaaaaaa33333   bbbbb   

                             160       170       180       190       200 
d4rz9a-  ( 137 )    gefelmhvdeFidellhservcdiilprlqkryvleeaeqlep       
d5f5ta-  ( 154 )    -gtslTyMdeFIddLLtkdrvcsTsLwkMrrrdiLedldlleprvsplgs
                      bbbbbaaaaaaaaaa  bb  bb      aaaaaa             

                             210    
d4rz9a-                             
d5f5ta-  ( 203 )    ledileeeeqaakned

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d4rz9a- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4rz9a- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pre-mRNA splicing factor Prp38A	Pre-mRNA splicing factor Prp38-like	Human (Homo sapiens) [TaxId: 9606]		view
d5f5ta- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5f5ta- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Pre-mRNA splicing factor Prp38A	Pre-mRNA splicing factor Prp38-like	Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) [TaxId: 759272]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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P	D	T	H	R	A	D	E	R	R	F	L	D	E	R	G	S	S	G	P	L	A	P	N	G	L	N	P	A	T	I	M	E	K	A	V	R	E	R	I	V	E	S	Y	F	W	K	E	Q	C	F	G	V	N	E	A	D	I	V	D	R	V	V	E	H	V	R	F	V	G	G	V	T	G	V	T	Q	K	P	S	P	F	L	C	L	A	F	K	L	L	Q	L	A	P	G	D	D	I	L	K	E	Y	L	Y	F	G	G	E	K	F	K	Y	L	R	A	L	A	A	F	Y	I	R	L	T	R	P	D	K	E	V	Y	T	L	L	E	P	F	L	E	D	R	R	K	L	R	R	K	G	K	N	-	G	T	S	L	T	Y	M	D	E	F	I	D	D	L	L	T	K	D	R	V	C	S	T	S	L	W	K	M	R	R	R	D	I	L	E	D	L	D	L	L	E	P	R	V	S	P	L	G	S	L	E	D	I	L	E	E	E	E	Q	A	A	K	N	E	D

Member	Chain	UniProtKB	GO term

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P	D	T	H	R	A	D	E	R	R	F	L	D	E	R	G	S	S	G	P	L	A	P	N	G	L	N	P	A	T	I	M	E	K	A	V	R	E	R	I	V	E	S	Y	F	W	K	E	Q	C	F	G	V	N	E	A	D	I	V	D	R	V	V	E	H	V	R	F	V	G	G	V	T	G	V	T	Q	K	P	S	P	F	L	C	L	A	F	K	L	L	Q	L	A	P	G	D	D	I	L	K	E	Y	L	Y	F	G	G	E	K	F	K	Y	L	R	A	L	A	A	F	Y	I	R	L	T	R	P	D	K	E	V	Y	T	L	L	E	P	F	L	E	D	R	R	K	L	R	R	K	G	K	N	-	G	T	S	L	T	Y	M	D	E	F	I	D	D	L	L	T	K	D	R	V	C	S	T	S	L	W	K	M	R	R	R	D	I	L	E	D	L	D	L	L	E	P	R	V	S	P	L	G	S	L	E	D	I	L	E	E	E	E	Q	A	A	K	N	E	D

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-	-	-	-	-	-	-	-	M	A	N	-	-	R	T	V	K	D	A	H	S	I	H	-	G	T	N	P	Q	Y	L	V	E	K	I	I	R	T	R	I	Y	E	S	K	Y	W	K	E	E	C	F	G	L	T	A	E	L	V	V	D	K	A	M	E	-	L	R	F	V	G	G	V	Y	G	G	N	I	K	P	T	P	F	L	C	L	T	L	K	M	L	Q	I	Q	P	E	K	D	I	I	V	E	F	I	K	-	-	N	E	D	F	K	Y	V	R	M	L	G	A	L	Y	M	R	L	T	G	T	A	I	D	C	Y	K	Y	L	E	P	L	Y	N	D	Y	R	K	I	K	S	Q	N	R	N	G	E	F	E	L	M	H	V	D	E	F	I	D	E	L	L	H	S	E	R	V	C	D	I	I	L	P	R	L	Q	K	R	Y	V	L	E	E	A	E	Q	L	E	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
P	D	T	H	R	A	D	E	R	R	F	L	D	E	R	G	S	S	G	P	L	A	P	N	G	L	N	P	A	T	I	M	E	K	A	V	R	E	R	I	V	E	S	Y	F	W	K	E	Q	C	F	G	V	N	E	A	D	I	V	D	R	V	V	E	H	V	R	F	V	G	G	V	T	G	V	T	Q	K	P	S	P	F	L	C	L	A	F	K	L	L	Q	L	A	P	G	D	D	I	L	K	E	Y	L	Y	F	G	G	E	K	F	K	Y	L	R	A	L	A	A	F	Y	I	R	L	T	R	P	D	K	E	V	Y	T	L	L	E	P	F	L	E	D	R	R	K	L	R	R	K	G	K	N	-	G	T	S	L	T	Y	M	D	E	F	I	D	D	L	L	T	K	D	R	V	C	S	T	S	L	W	K	M	R	R	R	D	I	L	E	D	L	D	L	L	E	P	R	V	S	P	L	G	S	L	E	D	I	L	E	E	E	E	Q	A	A	K	N	E	D

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-	-	-	-	-	-	-	-	M	A	N	-	-	R	T	V	K	D	A	H	S	I	H	-	G	T	N	P	Q	Y	L	V	E	K	I	I	R	T	R	I	Y	E	S	K	Y	W	K	E	E	C	F	G	L	T	A	E	L	V	V	D	K	A	M	E	-	L	R	F	V	G	G	V	Y	G	G	N	I	K	P	T	P	F	L	C	L	T	L	K	M	L	Q	I	Q	P	E	K	D	I	I	V	E	F	I	K	-	-	N	E	D	F	K	Y	V	R	M	L	G	A	L	Y	M	R	L	T	G	T	A	I	D	C	Y	K	Y	L	E	P	L	Y	N	D	Y	R	K	I	K	S	Q	N	R	N	G	E	F	E	L	M	H	V	D	E	F	I	D	E	L	L	H	S	E	R	V	C	D	I	I	L	P	R	L	Q	K	R	Y	V	L	E	E	A	E	Q	L	E	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
P	D	T	H	R	A	D	E	R	R	F	L	D	E	R	G	S	S	G	P	L	A	P	N	G	L	N	P	A	T	I	M	E	K	A	V	R	E	R	I	V	E	S	Y	F	W	K	E	Q	C	F	G	V	N	E	A	D	I	V	D	R	V	V	E	H	V	R	F	V	G	G	V	T	G	V	T	Q	K	P	S	P	F	L	C	L	A	F	K	L	L	Q	L	A	P	G	D	D	I	L	K	E	Y	L	Y	F	G	G	E	K	F	K	Y	L	R	A	L	A	A	F	Y	I	R	L	T	R	P	D	K	E	V	Y	T	L	L	E	P	F	L	E	D	R	R	K	L	R	R	K	G	K	N	-	G	T	S	L	T	Y	M	D	E	F	I	D	D	L	L	T	K	D	R	V	C	S	T	S	L	W	K	M	R	R	R	D	I	L	E	D	L	D	L	L	E	P	R	V	S	P	L	G	S	L	E	D	I	L	E	E	E	E	Q	A	A	K	N	E	D