PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3luua-  (   3 )    dprtpleirpli--srvevdWadghtSrltfehlrvecpa----------
d3n6wa1  (   1 )    mactIqkAealdgahlMqIlWydeeeslYpAvwLrdnCpcsdCyldsaka
                          bbbbb     bbbb     bb   aaaaaa              

                             60        70        80        90       
d3luua-  (  55 )    ---qivtgkehvsVvevvpvghyAVqLhFsdghtGiFtw-yLrrLdae
d3n6wa1  (  51 )    rkllvealdvnigIkgLifd--rkVyItWpdehySeFqadwLkkrc  
                                   bbbb     bbbb       bb    aaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3luua- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3luua- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	DUF971	GBBH N-terminal domain-like (DUF971)	Acidithiobacillus ferrooxidans [TaxId: 243159]		view
d3n6wa1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3n6wa1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Gamma-butyrobetaine hydroxylase (GBBH) N-terminal domain	GBBH N-terminal domain-like (DUF971)	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
D	P	R	T	P	L	E	I	R	P	L	I	-	-	S	R	V	E	V	D	W	A	D	G	H	T	S	R	L	T	F	E	H	L	R	V	E	C	P	A	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	I	V	T	G	K	E	H	V	S	V	V	E	V	V	P	V	G	H	Y	A	V	Q	L	H	F	S	D	G	H	T	G	I	F	T	W	-	Y	L	R	R	L	D	A	E
M	A	C	T	I	Q	K	A	E	A	L	D	G	A	H	L	M	Q	I	L	W	Y	D	E	E	E	S	L	Y	P	A	V	W	L	R	D	N	C	P	C	S	D	C	Y	L	D	S	A	K	A	R	K	L	L	V	E	A	L	D	V	N	I	G	I	K	G	L	I	F	D	-	-	R	K	V	Y	I	T	W	P	D	E	H	Y	S	E	F	Q	A	D	W	L	K	K	R	C	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90
D	P	R	T	P	L	E	I	R	P	L	I	-	-	S	R	V	E	V	D	W	A	D	G	H	T	S	R	L	T	F	E	H	L	R	V	E	C	P	A	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	I	V	T	G	K	E	H	V	S	V	V	E	V	V	P	V	G	H	Y	A	V	Q	L	H	F	S	D	G	H	T	G	I	F	T	W	-	Y	L	R	R	L	D	A	E
M	A	C	T	I	Q	K	A	E	A	L	D	G	A	H	L	M	Q	I	L	W	Y	D	E	E	E	S	L	Y	P	A	V	W	L	R	D	N	C	P	C	S	D	C	Y	L	D	S	A	K	A	R	K	L	L	V	E	A	L	D	V	N	I	G	I	K	G	L	I	F	D	-	-	R	K	V	Y	I	T	W	P	D	E	H	Y	S	E	F	Q	A	D	W	L	K	K	R	C	-	-

									10										20										30										40										50										60										70										80										90
D	P	R	T	P	L	E	I	R	P	L	I	-	-	S	R	V	E	V	D	W	A	D	G	H	T	S	R	L	T	F	E	H	L	R	V	E	C	P	A	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	I	V	T	G	K	E	H	V	S	V	V	E	V	V	P	V	G	H	Y	A	V	Q	L	H	F	S	D	G	H	T	G	I	F	T	W	-	Y	L	R	R	L	D	A	E
M	A	C	T	I	Q	K	A	E	A	L	D	G	A	H	L	M	Q	I	L	W	Y	D	E	E	E	S	L	Y	P	A	V	W	L	R	D	N	C	P	C	S	D	C	Y	L	D	S	A	K	A	R	K	L	L	V	E	A	L	D	V	N	I	G	I	K	G	L	I	F	D	-	-	R	K	V	Y	I	T	W	P	D	E	H	Y	S	E	F	Q	A	D	W	L	K	K	R	C	-	-

									10										20										30										40										50										60										70										80										90
D	P	R	T	P	L	E	I	R	P	L	I	-	-	S	R	V	E	V	D	W	A	D	G	H	T	S	R	L	T	F	E	H	L	R	V	E	C	P	A	-	-	-	-	-	-	-	-	-	-	-	-	-	Q	I	V	T	G	K	E	H	V	S	V	V	E	V	V	P	V	G	H	Y	A	V	Q	L	H	F	S	D	G	H	T	G	I	F	T	W	-	Y	L	R	R	L	D	A	E
M	A	C	T	I	Q	K	A	E	A	L	D	G	A	H	L	M	Q	I	L	W	Y	D	E	E	E	S	L	Y	P	A	V	W	L	R	D	N	C	P	C	S	D	C	Y	L	D	S	A	K	A	R	K	L	L	V	E	A	L	D	V	N	I	G	I	K	G	L	I	F	D	-	-	R	K	V	Y	I	T	W	P	D	E	H	Y	S	E	F	Q	A	D	W	L	K	K	R	C	-	-