Superfamily : 310599 [ CRISPR associated protein Cas1-like ]
Class : Multi-domain proteins (alpha and beta)
Fold : CRISPR associated protein Cas1-like
# of Members : 4
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d2yzsa-  (   2 )                  grVyyInshgtLsrhentLrFena----evkkdipV
d3goda-  (   3 )    dispselktilhSkranLyYLqhCrVlvnggrVEyVtdegrhshywnIpi
d3nkea-  (  94 )                                                      
d4w8ka-  (   4 )            qiltsqkrnMyIlsrCkVlVkngqVChlh--edg-nvytVpy
                                    bbbb   bbbbbb  bbbbb        bbb  3

                             60        70        80        90        100 
d2yzsa-  (  34 )    edVeEIFVFaeLslntkLlnFLaskgIPLHfFnyyGy----------ytg
d3goda-  (  53 )    anTTSLLLGtgTsit-qaAreLaragVLvGfCggggtplfsanevdveVs
d3nkea-  (  94 )                                                      
d4w8ka-  (  43 )    anTVFIGLaegTsitneAmsmLaangVIVFwtkGg---------gaadIi
                    33  bbbb   bb       aaaa    bbb                  b

                             110       120       130       140       150 
d2yzsa-  (  74 )    TfyPressvsghLlikQveHyldaqkrlyLAkSFViGSIlNLeyVY----
d3goda-  ( 103 )    wltPqseyrpteylqrWvgFwfdeekrLvAArhFQraRLerIrhsWledr
d3nkea-  (  94 )                         arsdkllyQakLaldedlrlkVVrkFelr
d4w8ka-  (  88 )    ChlPqadyrptkymqnWvrLwldeekKlsAAkeILkMRvdSLstHvhd--
                    bb         aaaaaaaaaa  aaaaaaaaaaaaaaaaaaaaaa     

                             160       170       180       190       200 
d2yzsa-  ( 120 )    -----kis---------AdtylnkVketnsipeL-sVeaeFrklCykkLe
d3goda-  ( 153 )    vLrdagFaVdataLavAVedSaraLeqApnhehLlteearLskrLfkLAA
d3nkea-  ( 124 )    fg----------------epApar----rsVeqLrgiegsrvratyallA
d4w8ka-  ( 136 )    ----fgVdvenkrVssIvnkFdkgVtqAtsfesLlghegtFvksLykeYa
                                      aaaaaaaa    aaaaaaaaaaaaaaaaaaaa

                             210       220       230       240       250 
d2yzsa-  ( 156 )    evTg-wele-----ppqnpLnALisFGnsLTyAKVLGEIYkTqLnPtvSY
d3goda-  ( 203 )    qAtrygeFvrakrGsggdpANrFLdHGnYLAYGlAATATwVLgIphglAV
d3nkea-  ( 154 )    kqygvtWngrryd---gdtINqCIsaAtscLygvTeaAIlaAgYapaiGF
d4w8ka-  ( 182 )    leye-ieFkrdh--ksadnyNkFLtlGnyYAYGIArSSLwaLgIdnsfpL
                    aa                aaaaaaaaaaaaaaaaaaaaaaa         

                             260       270       280       290       300 
d2yzsa-  ( 205 )    lhep-srfSLSlDVAeVFkPIFVDnLIirLIqenkIdkthFstelnTfLn
d3goda-  ( 253 )    LhgktrrgGLVfDvAdLikdSLILPQAFLSAr-------------gde--
d3nkea-  ( 207 )    vhtg-kplSFVydIAdiikfdtVVpkAFeIArrnpg--------------
d4w8ka-  ( 229 )    LhgstrrggLVfDVadIIkTSIILPLAFhAAdq------------gms--
                            aaaaaaaaaa    aaaaaaaaaa                  

                             310       320       330       340       350 
d2yzsa-  ( 257 )    eiGrkvFLkaFnelLettifypklnrkVsHrtLIklELykLikhLleeev
d3goda-  ( 289 )    ---eqdFrqaCldnLsr----------aqALdfI-dTLkdVAqrstv   
d3nkea-  ( 242 )    -epdreVrlaCrdifrss----------ktlakLiplIedVLaaGeiqpp
d4w8ka-  ( 265 )    ---nteFkrsCvayFdk----------ndILa---yLinnIkrLCmen  
                       aaaaaaaaaaaaaa            aaa   aaaaaaaaa      

                             360 
d2yzsa-  ( 307 )    YlplnYgglk
d3goda-                       
d3nkea-                       
d4w8ka-
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Cas1CRISPR associated protein Cas1-likeAquifex aeolicus [TaxId: 63363]view
Cas1CRISPR associated protein Cas1-likePseudomonas aeruginosa UCBPP-PA14 [TaxId: 208963]view
Cas1 C-terminal fragmentCRISPR associated protein Cas1-likeEscherichia coli K-12 [TaxId: 83333]view
automated matchesautomated matchesVibrio phage [TaxId: 979528]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

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- - - - - - - - - - - - - - G R V Y Y I N S H G T L S R H E N T L R F E N A - - - - E V K K D I P V E D V E E I F V F A E L S L N T K L L N F L A S K G I P L H F F N Y Y G Y - - - - - - - - - - Y T G T F Y P R E S S V S G H L L I K Q V E H Y L D A Q K R L Y L A K S F V I G S I L N L E Y V Y - - - - - - - - - K I S - - - - - - - - - A D T Y L N K V K E T N S I P E L - S V E A E F R K L C Y K K L E E V T G - W E L E - - - - - P P Q N P L N A L I S F G N S L T Y A K V L G E I Y K T Q L N P T V S Y L H E P - S R F S L S L D V A E V F K P I F V D N L I I R L I Q E N K I D K T H F S T E L N T F L N E I G R K V F L K A F N E L L E T T I F Y P K L N R K V S H R T L I K L E L Y K L I K H L L E E E V Y L P L N Y G G L K
D I S P S E L K T I L H S K R A N L Y Y L Q H C R V L V N G G R V E Y V T D E G R H S H Y W N I P I A N T T S L L L G T G T S I T - Q A A R E L A R A G V L V G F C G G G G T P L F S A N E V D V E V S W L T P Q S E Y R P T E Y L Q R W V G F W F D E E K R L V A A R H F Q R A R L E R I R H S W L E D R V L R D A G F A V D A T A L A V A V E D S A R A L E Q A P N H E H L L T E E A R L S K R L F K L A A Q A T R Y G E F V R A K R G S G G D P A N R F L D H G N Y L A Y G L A A T A T W V L G I P H G L A V L H G K T R R G G L V F D V A D L I K D S L I L P Q A F L S A R - - - - - - - - - - - - - G D E - - - - - E Q D F R Q A C L D N L S R - - - - - - - - - - A Q A L D F I - D T L K D V A Q R S T V - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A R S D K L L Y Q A K L A L D E D L R L K V V R K F E L R F G - - - - - - - - - - - - - - - - E P A P A R - - - - R S V E Q L R G I E G S R V R A T Y A L L A K Q Y G V T W N G R R Y D - - - G D T I N Q C I S A A T S C L Y G V T E A A I L A A G Y A P A I G F V H T G - K P L S F V Y D I A D I I K F D T V V P K A F E I A R R N P G - - - - - - - - - - - - - - - E P D R E V R L A C R D I F R S S - - - - - - - - - - K T L A K L I P L I E D V L A A G E I Q P P - - - - - - - - - -
- - - - - - - - Q I L T S Q K R N M Y I L S R C K V L V K N G Q V C H L H - - E D G - N V Y T V P Y A N T V F I G L A E G T S I T N E A M S M L A A N G V I V F W T K G G - - - - - - - - - G A A D I I C H L P Q A D Y R P T K Y M Q N W V R L W L D E E K K L S A A K E I L K M R V D S L S T H V H D - - - - - - F G V D V E N K R V S S I V N K F D K G V T Q A T S F E S L L G H E G T F V K S L Y K E Y A L E Y E - I E F K R D H - - K S A D N Y N K F L T L G N Y Y A Y G I A R S S L W A L G I D N S F P L L H G S T R R G G L V F D V A D I I K T S I I L P L A F H A A D Q - - - - - - - - - - - - G M S - - - - - N T E F K R S C V A Y F D K - - - - - - - - - - N D I L A - - - Y L I N N I K R L C M E N - - - - - - - - - - - -

 

 

 

 

 

Member Chain UniProtKB GO term
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in