PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d3hola3  (  24 )    eeykdvetakkekeqlgelmepalGyVvkvpvssfenkkvdisdievitn
d3hola4  ( 295 )                          idAskidltn---------fsiselnNf
                                            bbbbb                b    

                             60        70        80        90        100 
d3hola3  (  74 )    gnlddVpykanSs----------------kYn--ypdiktkdsslqyvrs
d3hola4  ( 314 )    gdAsvLiid---gkkIkLagsgftnkhtieIngktmVAvAccsnleymkf
                                                       bbb         bbb

                             110       120       
d3hola3  ( 106 )    gyViDgehsgs----nekGyvYyKgnspa
d3hola4  ( 361 )    gqLwqqa----eggkpennslFlQge-rt
                    bbbbb             bbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d3hola3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3hola3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Handle domain of Transferrin binding protein TbpB	Handle domain of Transferrin binding protein TbpB-like	Actinobacillus pleuropneumoniae [TaxId: 715]		view
d3hola4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3hola4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Handle domain of Transferrin binding protein TbpB	Handle domain of Transferrin binding protein TbpB-like	Actinobacillus pleuropneumoniae [TaxId: 715]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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E	E	Y	K	D	V	E	T	A	K	K	E	K	E	Q	L	G	E	L	M	E	P	A	L	G	Y	V	V	K	V	P	V	S	S	F	E	N	K	K	V	D	I	S	D	I	E	V	I	T	N	G	N	L	D	D	V	P	Y	K	A	N	S	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	Y	N	-	-	Y	P	D	I	K	T	K	D	S	S	L	Q	Y	V	R	S	G	Y	V	I	D	G	E	H	S	G	S	-	-	-	-	N	E	K	G	Y	V	Y	Y	K	G	N	S	P	A
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	D	A	S	K	I	D	L	T	N	-	-	-	-	-	-	-	-	-	F	S	I	S	E	L	N	N	F	G	D	A	S	V	L	I	I	D	-	-	-	G	K	K	I	K	L	A	G	S	G	F	T	N	K	H	T	I	E	I	N	G	K	T	M	V	A	V	A	C	C	S	N	L	E	Y	M	K	F	G	Q	L	W	Q	Q	A	-	-	-	-	E	G	G	K	P	E	N	N	S	L	F	L	Q	G	E	-	R	T

Member	Chain	UniProtKB	GO term

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E	E	Y	K	D	V	E	T	A	K	K	E	K	E	Q	L	G	E	L	M	E	P	A	L	G	Y	V	V	K	V	P	V	S	S	F	E	N	K	K	V	D	I	S	D	I	E	V	I	T	N	G	N	L	D	D	V	P	Y	K	A	N	S	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	Y	N	-	-	Y	P	D	I	K	T	K	D	S	S	L	Q	Y	V	R	S	G	Y	V	I	D	G	E	H	S	G	S	-	-	-	-	N	E	K	G	Y	V	Y	Y	K	G	N	S	P	A
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	D	A	S	K	I	D	L	T	N	-	-	-	-	-	-	-	-	-	F	S	I	S	E	L	N	N	F	G	D	A	S	V	L	I	I	D	-	-	-	G	K	K	I	K	L	A	G	S	G	F	T	N	K	H	T	I	E	I	N	G	K	T	M	V	A	V	A	C	C	S	N	L	E	Y	M	K	F	G	Q	L	W	Q	Q	A	-	-	-	-	E	G	G	K	P	E	N	N	S	L	F	L	Q	G	E	-	R	T

									10										20										30										40										50										60										70										80										90										100										110										120
E	E	Y	K	D	V	E	T	A	K	K	E	K	E	Q	L	G	E	L	M	E	P	A	L	G	Y	V	V	K	V	P	V	S	S	F	E	N	K	K	V	D	I	S	D	I	E	V	I	T	N	G	N	L	D	D	V	P	Y	K	A	N	S	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	Y	N	-	-	Y	P	D	I	K	T	K	D	S	S	L	Q	Y	V	R	S	G	Y	V	I	D	G	E	H	S	G	S	-	-	-	-	N	E	K	G	Y	V	Y	Y	K	G	N	S	P	A
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	D	A	S	K	I	D	L	T	N	-	-	-	-	-	-	-	-	-	F	S	I	S	E	L	N	N	F	G	D	A	S	V	L	I	I	D	-	-	-	G	K	K	I	K	L	A	G	S	G	F	T	N	K	H	T	I	E	I	N	G	K	T	M	V	A	V	A	C	C	S	N	L	E	Y	M	K	F	G	Q	L	W	Q	Q	A	-	-	-	-	E	G	G	K	P	E	N	N	S	L	F	L	Q	G	E	-	R	T

									10										20										30										40										50										60										70										80										90										100										110										120
E	E	Y	K	D	V	E	T	A	K	K	E	K	E	Q	L	G	E	L	M	E	P	A	L	G	Y	V	V	K	V	P	V	S	S	F	E	N	K	K	V	D	I	S	D	I	E	V	I	T	N	G	N	L	D	D	V	P	Y	K	A	N	S	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	K	Y	N	-	-	Y	P	D	I	K	T	K	D	S	S	L	Q	Y	V	R	S	G	Y	V	I	D	G	E	H	S	G	S	-	-	-	-	N	E	K	G	Y	V	Y	Y	K	G	N	S	P	A
-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	D	A	S	K	I	D	L	T	N	-	-	-	-	-	-	-	-	-	F	S	I	S	E	L	N	N	F	G	D	A	S	V	L	I	I	D	-	-	-	G	K	K	I	K	L	A	G	S	G	F	T	N	K	H	T	I	E	I	N	G	K	T	M	V	A	V	A	C	C	S	N	L	E	Y	M	K	F	G	Q	L	W	Q	Q	A	-	-	-	-	E	G	G	K	P	E	N	N	S	L	F	L	Q	G	E	-	R	T