PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2hg4a4  ( 466 )            gpvpLvlsgrdeqaraqAgrlAdhLareprnslrdtGftlat
d2vz8a5  ( 412 )    pppaqhaalprlLqASgrtl---eaVqtlLeqGlrhsr--dlafVgmlne
                              bbbbbbb      aaaaaaaaaaa       aaaaaaaaa

                             60        70        80        90       
d2hg4a4  ( 509 )    rrsaw----ehrAvVvGdrdeAlaGLrAVadgriadrTatgqar---t
d2vz8a5  ( 457 )    iAavspvampfrgyAvLgg-------ea-------gsqevqqvpgskr
                              bbbbbbb                    bbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2hg4a4 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2hg4a4 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)	KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like	Saccharopolyspora erythraea [TaxId: 1836]		view
d2vz8a5 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2vz8a5 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Acyltransferase domain N-terminal linker	KS-to-AT linker domain from 6-deoxyerythronolide B synthase (DEBS)-like	Pig (Sus scrofa) [TaxId: 9823]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90
-	-	-	-	-	-	-	-	G	P	V	P	L	V	L	S	G	R	D	E	Q	A	R	A	Q	A	G	R	L	A	D	H	L	A	R	E	P	R	N	S	L	R	D	T	G	F	T	L	A	T	R	R	S	A	W	-	-	-	-	E	H	R	A	V	V	V	G	D	R	D	E	A	L	A	G	L	R	A	V	A	D	G	R	I	A	D	R	T	A	T	G	Q	A	R	-	-	-	T
P	P	P	A	Q	H	A	A	L	P	R	L	L	Q	A	S	G	R	T	L	-	-	-	E	A	V	Q	T	L	L	E	Q	G	L	R	H	S	R	-	-	D	L	A	F	V	G	M	L	N	E	I	A	A	V	S	P	V	A	M	P	F	R	G	Y	A	V	L	G	G	-	-	-	-	-	-	-	E	A	-	-	-	-	-	-	-	G	S	Q	E	V	Q	Q	V	P	G	S	K	R

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90
-	-	-	-	-	-	-	-	G	P	V	P	L	V	L	S	G	R	D	E	Q	A	R	A	Q	A	G	R	L	A	D	H	L	A	R	E	P	R	N	S	L	R	D	T	G	F	T	L	A	T	R	R	S	A	W	-	-	-	-	E	H	R	A	V	V	V	G	D	R	D	E	A	L	A	G	L	R	A	V	A	D	G	R	I	A	D	R	T	A	T	G	Q	A	R	-	-	-	T
P	P	P	A	Q	H	A	A	L	P	R	L	L	Q	A	S	G	R	T	L	-	-	-	E	A	V	Q	T	L	L	E	Q	G	L	R	H	S	R	-	-	D	L	A	F	V	G	M	L	N	E	I	A	A	V	S	P	V	A	M	P	F	R	G	Y	A	V	L	G	G	-	-	-	-	-	-	-	E	A	-	-	-	-	-	-	-	G	S	Q	E	V	Q	Q	V	P	G	S	K	R

									10										20										30										40										50										60										70										80										90
-	-	-	-	-	-	-	-	G	P	V	P	L	V	L	S	G	R	D	E	Q	A	R	A	Q	A	G	R	L	A	D	H	L	A	R	E	P	R	N	S	L	R	D	T	G	F	T	L	A	T	R	R	S	A	W	-	-	-	-	E	H	R	A	V	V	V	G	D	R	D	E	A	L	A	G	L	R	A	V	A	D	G	R	I	A	D	R	T	A	T	G	Q	A	R	-	-	-	T
P	P	P	A	Q	H	A	A	L	P	R	L	L	Q	A	S	G	R	T	L	-	-	-	E	A	V	Q	T	L	L	E	Q	G	L	R	H	S	R	-	-	D	L	A	F	V	G	M	L	N	E	I	A	A	V	S	P	V	A	M	P	F	R	G	Y	A	V	L	G	G	-	-	-	-	-	-	-	E	A	-	-	-	-	-	-	-	G	S	Q	E	V	Q	Q	V	P	G	S	K	R

									10										20										30										40										50										60										70										80										90
-	-	-	-	-	-	-	-	G	P	V	P	L	V	L	S	G	R	D	E	Q	A	R	A	Q	A	G	R	L	A	D	H	L	A	R	E	P	R	N	S	L	R	D	T	G	F	T	L	A	T	R	R	S	A	W	-	-	-	-	E	H	R	A	V	V	V	G	D	R	D	E	A	L	A	G	L	R	A	V	A	D	G	R	I	A	D	R	T	A	T	G	Q	A	R	-	-	-	T
P	P	P	A	Q	H	A	A	L	P	R	L	L	Q	A	S	G	R	T	L	-	-	-	E	A	V	Q	T	L	L	E	Q	G	L	R	H	S	R	-	-	D	L	A	F	V	G	M	L	N	E	I	A	A	V	S	P	V	A	M	P	F	R	G	Y	A	V	L	G	G	-	-	-	-	-	-	-	E	A	-	-	-	-	-	-	-	G	S	Q	E	V	Q	Q	V	P	G	S	K	R