PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d2foma1  (  49 )    adleleraadvrweqaeisgsSpilsisikneeeeqtl    
d6y3ba-  (  50 )     dmyieragditwekav-----tgnsprldvaldesgdfslv

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2foma1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2foma1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Flavivirus non-structural protein NS2B	Flavivirus non-structural protein NS2B-like	Dengue virus 2 [TaxId: 11060]		view
d6y3ba- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6y3ba- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Zika virus [TaxId: 64320]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	D	L	E	L	E	R	A	A	D	V	R	W	E	Q	A	E	I	S	G	S	S	P	I	L	S	I	S	I	K	N	E	E	E	E	Q	T	L	-	-	-	-
-	D	M	Y	I	E	R	A	G	D	I	T	W	E	K	A	V	-	-	-	-	-	T	G	N	S	P	R	L	D	V	A	L	D	E	S	G	D	F	S	L	V

Member	Chain	UniProtKB	GO term

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A	D	L	E	L	E	R	A	A	D	V	R	W	E	Q	A	E	I	S	G	S	S	P	I	L	S	I	S	I	K	N	E	E	E	E	Q	T	L	-	-	-	-
-	D	M	Y	I	E	R	A	G	D	I	T	W	E	K	A	V	-	-	-	-	-	T	G	N	S	P	R	L	D	V	A	L	D	E	S	G	D	F	S	L	V

									10										20										30										40
A	D	L	E	L	E	R	A	A	D	V	R	W	E	Q	A	E	I	S	G	S	S	P	I	L	S	I	S	I	K	N	E	E	E	E	Q	T	L	-	-	-	-
-	D	M	Y	I	E	R	A	G	D	I	T	W	E	K	A	V	-	-	-	-	-	T	G	N	S	P	R	L	D	V	A	L	D	E	S	G	D	F	S	L	V

									10										20										30										40
A	D	L	E	L	E	R	A	A	D	V	R	W	E	Q	A	E	I	S	G	S	S	P	I	L	S	I	S	I	K	N	E	E	E	E	Q	T	L	-	-	-	-
-	D	M	Y	I	E	R	A	G	D	I	T	W	E	K	A	V	-	-	-	-	-	T	G	N	S	P	R	L	D	V	A	L	D	E	S	G	D	F	S	L	V