PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2w4ra-  ( 544 )      rqqfpvehVqLLCincmvaVghGsdLrkVegthHVNvnpnFsnyynvs
d3ga3a1  ( 893 )    akhyknnpslItFlCkncsvlAcsGedIhvIekmhhVNmtpeFkelYivr
d4a2va-  ( 807 )             qknLlCgkckayACsTddIriIkdshHIVlgeaFkerYttk
                               bbbb     bbbb333 bbb   bbb    3333 bbbb

                             60        70        80        90        100 
d2w4ra-  ( 592 )    rdp---vvfk-dWkpgGvIsCrn--cgevWGlqMiyks-vkLpvLkvrsM
d3ga3a1  ( 943 )    enkalqkkca-dyqinGeIiCk---cgqaWgtmMvhkg-ldlPCLkIrNF
d4a2va-  ( 848 )    phk--kpmqfdgFekkskMyCrnnnCqhdWgiTVkyltfdnLPvIkikSF
                                 bbbbbbbb       bbbbbbbb   bbbbbb 333b

                             110       120       130      
d2w4ra-  ( 639 )    lLeTpq--griqakkwsrVPFsVpdFdflqhcaenlsd
d3ga3a1  ( 988 )    vVvfknnstkkqykkwveLpItFpnldyse        
d4a2va-  ( 896 )    vMe-----sqmdFqkWksinsslknfdveeMsnlyppf
                    bb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d2w4ra- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2w4ra- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	RIG-I C-terminal domain-like	Human (Homo sapiens) [TaxId: 9606]	view
d3ga3a1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3ga3a1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	RIG-I C-terminal domain-like	Human (Homo sapiens) [TaxId: 9606]	view
d4a2va- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4a2va- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Duck (Anas platyrhynchos) [TaxId: 8839]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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A	K	H	Y	K	N	N	P	S	L	I	T	F	L	C	K	N	C	S	V	L	A	C	S	G	E	D	I	H	V	I	E	K	M	H	H	V	N	M	T	P	E	F	K	E	L	Y	I	V	R	E	N	K	A	L	Q	K	K	C	A	-	D	Y	Q	I	N	G	E	I	I	C	K	-	-	-	C	G	Q	A	W	G	T	M	M	V	H	K	G	-	L	D	L	P	C	L	K	I	R	N	F	V	V	V	F	K	N	N	S	T	K	K	Q	Y	K	K	W	V	E	L	P	I	T	F	P	N	L	D	Y	S	E	-	-	-	-	-	-	-	-
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Member	Chain	UniProtKB	GO term

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A	K	H	Y	K	N	N	P	S	L	I	T	F	L	C	K	N	C	S	V	L	A	C	S	G	E	D	I	H	V	I	E	K	M	H	H	V	N	M	T	P	E	F	K	E	L	Y	I	V	R	E	N	K	A	L	Q	K	K	C	A	-	D	Y	Q	I	N	G	E	I	I	C	K	-	-	-	C	G	Q	A	W	G	T	M	M	V	H	K	G	-	L	D	L	P	C	L	K	I	R	N	F	V	V	V	F	K	N	N	S	T	K	K	Q	Y	K	K	W	V	E	L	P	I	T	F	P	N	L	D	Y	S	E	-	-	-	-	-	-	-	-
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A	K	H	Y	K	N	N	P	S	L	I	T	F	L	C	K	N	C	S	V	L	A	C	S	G	E	D	I	H	V	I	E	K	M	H	H	V	N	M	T	P	E	F	K	E	L	Y	I	V	R	E	N	K	A	L	Q	K	K	C	A	-	D	Y	Q	I	N	G	E	I	I	C	K	-	-	-	C	G	Q	A	W	G	T	M	M	V	H	K	G	-	L	D	L	P	C	L	K	I	R	N	F	V	V	V	F	K	N	N	S	T	K	K	Q	Y	K	K	W	V	E	L	P	I	T	F	P	N	L	D	Y	S	E	-	-	-	-	-	-	-	-
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