PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d1z1wa3  ( 415 )     gyPVIkLkrngrkitMyQtrflln--------geeeGrwpVpVnIkkk-
d4fkea3  ( 545 )      fPvItVdtk--tGnIsQkhflldsesnvtrssafdylwiVpIsSikng
d4qmea3  ( 439 )    agtpvleAeGlnniFeltvkqtvp--ptpdtdkq----pipvkvGllnng
d6q4ra3  ( 530 )      fPlItItvrgrnVhMkQehymkg---------dtgylwhVpLtfiTsk
                       bbbbbb    bbbbbbbb                    bbbbbb   

                             60        70        80        90        100 
d1z1wa3  ( 455 )    -d----------gverilLed-easie--Ad------glikInAdsagfY
d4fkea3  ( 591 )    vm----------qdhywLrdvsqaqn---dlFktasddwVlLNvnvtgyF
d4qmea3  ( 489 )    eavaFdyqgkrateavlllteaeqtFlle---gvteavvPsllrgfsapv
d6q4ra3  ( 574 )    sd----------mvhrflLktktdvli--Lpeeve---wIkFnvgmngyY
                     b            bbbb    bbbbb            bbb 333    

                          
d1z1wa3  ( 485 )    rVlyd 
d4fkea3  ( 628 )    qvnyde
d4qmea3  ( 536 )    hlny  
d6q4ra3  ( 609 )    ivhyed
                    bbbb

Domains
Outliers

Domain ID	Name	Family	Source	STRING-DB
d1z1wa3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d1z1wa3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Tricorn protease interacting factor F3 insert domain	Zn aminopeptidase insert domain	Thermoplasma acidophilum [TaxId: 2303]	view
d4fkea3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4fkea3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Pig (Sus scrofa) [TaxId: 9823]	view
d4qmea3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d4qmea3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Aminopeptidase N (APN) domain 3	Zn aminopeptidase insert domain	Neisseria meningitidis [TaxId: 122586]	view
d6q4ra3 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d6q4ra3 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	automated matches	Human (Homo sapiens) [TaxId: 9606]	view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	G	Y	P	V	I	K	L	K	R	N	G	R	K	I	T	M	Y	Q	T	R	F	L	L	N	-	-	-	-	-	-	-	-	G	E	E	E	G	R	W	P	V	P	V	N	I	K	K	K	-	-	D	-	-	-	-	-	-	-	-	-	-	G	V	E	R	I	L	L	E	D	-	E	A	S	I	E	-	-	A	D	-	-	-	-	-	-	G	L	I	K	I	N	A	D	S	A	G	F	Y	R	V	L	Y	D	-
-	-	F	P	V	I	T	V	D	T	K	-	-	T	G	N	I	S	Q	K	H	F	L	L	D	S	E	S	N	V	T	R	S	S	A	F	D	Y	L	W	I	V	P	I	S	S	I	K	N	G	V	M	-	-	-	-	-	-	-	-	-	-	Q	D	H	Y	W	L	R	D	V	S	Q	A	Q	N	-	-	-	D	L	F	K	T	A	S	D	D	W	V	L	L	N	V	N	V	T	G	Y	F	Q	V	N	Y	D	E
A	G	T	P	V	L	E	A	E	G	L	N	N	I	F	E	L	T	V	K	Q	T	V	P	-	-	P	T	P	D	T	D	K	Q	-	-	-	-	P	I	P	V	K	V	G	L	L	N	N	G	E	A	V	A	F	D	Y	Q	G	K	R	A	T	E	A	V	L	L	L	T	E	A	E	Q	T	F	L	L	E	-	-	-	G	V	T	E	A	V	V	P	S	L	L	R	G	F	S	A	P	V	H	L	N	Y	-	-
-	-	F	P	L	I	T	I	T	V	R	G	R	N	V	H	M	K	Q	E	H	Y	M	K	G	-	-	-	-	-	-	-	-	-	D	T	G	Y	L	W	H	V	P	L	T	F	I	T	S	K	S	D	-	-	-	-	-	-	-	-	-	-	M	V	H	R	F	L	L	K	T	K	T	D	V	L	I	-	-	L	P	E	E	V	E	-	-	-	W	I	K	F	N	V	G	M	N	G	Y	Y	I	V	H	Y	E	D

Member	Chain	UniProtKB	GO term

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-	G	Y	P	V	I	K	L	K	R	N	G	R	K	I	T	M	Y	Q	T	R	F	L	L	N	-	-	-	-	-	-	-	-	G	E	E	E	G	R	W	P	V	P	V	N	I	K	K	K	-	-	D	-	-	-	-	-	-	-	-	-	-	G	V	E	R	I	L	L	E	D	-	E	A	S	I	E	-	-	A	D	-	-	-	-	-	-	G	L	I	K	I	N	A	D	S	A	G	F	Y	R	V	L	Y	D	-
-	-	F	P	V	I	T	V	D	T	K	-	-	T	G	N	I	S	Q	K	H	F	L	L	D	S	E	S	N	V	T	R	S	S	A	F	D	Y	L	W	I	V	P	I	S	S	I	K	N	G	V	M	-	-	-	-	-	-	-	-	-	-	Q	D	H	Y	W	L	R	D	V	S	Q	A	Q	N	-	-	-	D	L	F	K	T	A	S	D	D	W	V	L	L	N	V	N	V	T	G	Y	F	Q	V	N	Y	D	E
A	G	T	P	V	L	E	A	E	G	L	N	N	I	F	E	L	T	V	K	Q	T	V	P	-	-	P	T	P	D	T	D	K	Q	-	-	-	-	P	I	P	V	K	V	G	L	L	N	N	G	E	A	V	A	F	D	Y	Q	G	K	R	A	T	E	A	V	L	L	L	T	E	A	E	Q	T	F	L	L	E	-	-	-	G	V	T	E	A	V	V	P	S	L	L	R	G	F	S	A	P	V	H	L	N	Y	-	-
-	-	F	P	L	I	T	I	T	V	R	G	R	N	V	H	M	K	Q	E	H	Y	M	K	G	-	-	-	-	-	-	-	-	-	D	T	G	Y	L	W	H	V	P	L	T	F	I	T	S	K	S	D	-	-	-	-	-	-	-	-	-	-	M	V	H	R	F	L	L	K	T	K	T	D	V	L	I	-	-	L	P	E	E	V	E	-	-	-	W	I	K	F	N	V	G	M	N	G	Y	Y	I	V	H	Y	E	D

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-	G	Y	P	V	I	K	L	K	R	N	G	R	K	I	T	M	Y	Q	T	R	F	L	L	N	-	-	-	-	-	-	-	-	G	E	E	E	G	R	W	P	V	P	V	N	I	K	K	K	-	-	D	-	-	-	-	-	-	-	-	-	-	G	V	E	R	I	L	L	E	D	-	E	A	S	I	E	-	-	A	D	-	-	-	-	-	-	G	L	I	K	I	N	A	D	S	A	G	F	Y	R	V	L	Y	D	-
-	-	F	P	V	I	T	V	D	T	K	-	-	T	G	N	I	S	Q	K	H	F	L	L	D	S	E	S	N	V	T	R	S	S	A	F	D	Y	L	W	I	V	P	I	S	S	I	K	N	G	V	M	-	-	-	-	-	-	-	-	-	-	Q	D	H	Y	W	L	R	D	V	S	Q	A	Q	N	-	-	-	D	L	F	K	T	A	S	D	D	W	V	L	L	N	V	N	V	T	G	Y	F	Q	V	N	Y	D	E
A	G	T	P	V	L	E	A	E	G	L	N	N	I	F	E	L	T	V	K	Q	T	V	P	-	-	P	T	P	D	T	D	K	Q	-	-	-	-	P	I	P	V	K	V	G	L	L	N	N	G	E	A	V	A	F	D	Y	Q	G	K	R	A	T	E	A	V	L	L	L	T	E	A	E	Q	T	F	L	L	E	-	-	-	G	V	T	E	A	V	V	P	S	L	L	R	G	F	S	A	P	V	H	L	N	Y	-	-
-	-	F	P	L	I	T	I	T	V	R	G	R	N	V	H	M	K	Q	E	H	Y	M	K	G	-	-	-	-	-	-	-	-	-	D	T	G	Y	L	W	H	V	P	L	T	F	I	T	S	K	S	D	-	-	-	-	-	-	-	-	-	-	M	V	H	R	F	L	L	K	T	K	T	D	V	L	I	-	-	L	P	E	E	V	E	-	-	-	W	I	K	F	N	V	G	M	N	G	Y	Y	I	V	H	Y	E	D

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-	G	Y	P	V	I	K	L	K	R	N	G	R	K	I	T	M	Y	Q	T	R	F	L	L	N	-	-	-	-	-	-	-	-	G	E	E	E	G	R	W	P	V	P	V	N	I	K	K	K	-	-	D	-	-	-	-	-	-	-	-	-	-	G	V	E	R	I	L	L	E	D	-	E	A	S	I	E	-	-	A	D	-	-	-	-	-	-	G	L	I	K	I	N	A	D	S	A	G	F	Y	R	V	L	Y	D	-
-	-	F	P	V	I	T	V	D	T	K	-	-	T	G	N	I	S	Q	K	H	F	L	L	D	S	E	S	N	V	T	R	S	S	A	F	D	Y	L	W	I	V	P	I	S	S	I	K	N	G	V	M	-	-	-	-	-	-	-	-	-	-	Q	D	H	Y	W	L	R	D	V	S	Q	A	Q	N	-	-	-	D	L	F	K	T	A	S	D	D	W	V	L	L	N	V	N	V	T	G	Y	F	Q	V	N	Y	D	E
A	G	T	P	V	L	E	A	E	G	L	N	N	I	F	E	L	T	V	K	Q	T	V	P	-	-	P	T	P	D	T	D	K	Q	-	-	-	-	P	I	P	V	K	V	G	L	L	N	N	G	E	A	V	A	F	D	Y	Q	G	K	R	A	T	E	A	V	L	L	L	T	E	A	E	Q	T	F	L	L	E	-	-	-	G	V	T	E	A	V	V	P	S	L	L	R	G	F	S	A	P	V	H	L	N	Y	-	-
-	-	F	P	L	I	T	I	T	V	R	G	R	N	V	H	M	K	Q	E	H	Y	M	K	G	-	-	-	-	-	-	-	-	-	D	T	G	Y	L	W	H	V	P	L	T	F	I	T	S	K	S	D	-	-	-	-	-	-	-	-	-	-	M	V	H	R	F	L	L	K	T	K	T	D	V	L	I	-	-	L	P	E	E	V	E	-	-	-	W	I	K	F	N	V	G	M	N	G	Y	Y	I	V	H	Y	E	D