PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d2a73b6  ( 912 )    eGirmnktvavrtLdPerlgregvqkedIppAdLsdqVpdteSetrIlLq
d3cu7ad  ( 932 )    e-gvkresysgvtLDPrgiygtisrrkeFpyripldlVpkteikRiLsVk
                       bbbbbbb  bb            bbb              bbbbbbb

                             60        70        80        90        100 
d2a73b6  ( 962 )    G-eLnLdVsLqLpsrsskithrIhwesasllrseetkenegFtVtAe-gk
d3cu7ad  ( 981 )    GlrlsMdIdVsYkhkgalhnykMtdkn-flgrpveVllnddLiVsTgfgs
                             bb                      bb      bbb      

                             110   
d2a73b6  (1316 )    gqgtLsVvTmYhaka
d3cu7ad  (1355 )    GlAtVhVttvVhkts
                      bbbbbbbbbb

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2a73b6 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2a73b6 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Complement C3 CUB domain	Complement system CUB domain	Human (Homo sapiens) [TaxId: 9606]		view
d3cu7ad # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d3cu7ad # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Complement C5 CUB domain	Complement system CUB domain	Human (Homo sapiens) [TaxId: 9606]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70										80										90										100										110
E	G	I	R	M	N	K	T	V	A	V	R	T	L	D	P	E	R	L	G	R	E	G	V	Q	K	E	D	I	P	P	A	D	L	S	D	Q	V	P	D	T	E	S	E	T	R	I	L	L	Q	G	-	E	L	N	L	D	V	S	L	Q	L	P	S	R	S	S	K	I	T	H	R	I	H	W	E	S	A	S	L	L	R	S	E	E	T	K	E	N	E	G	F	T	V	T	A	E	-	G	K	G	Q	G	T	L	S	V	V	T	M	Y	H	A	K	A
E	-	G	V	K	R	E	S	Y	S	G	V	T	L	D	P	R	G	I	Y	G	T	I	S	R	R	K	E	F	P	Y	R	I	P	L	D	L	V	P	K	T	E	I	K	R	I	L	S	V	K	G	L	R	L	S	M	D	I	D	V	S	Y	K	H	K	G	A	L	H	N	Y	K	M	T	D	K	N	-	F	L	G	R	P	V	E	V	L	L	N	D	D	L	I	V	S	T	G	F	G	S	G	L	A	T	V	H	V	T	T	V	V	H	K	T	S

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70										80										90										100										110
E	G	I	R	M	N	K	T	V	A	V	R	T	L	D	P	E	R	L	G	R	E	G	V	Q	K	E	D	I	P	P	A	D	L	S	D	Q	V	P	D	T	E	S	E	T	R	I	L	L	Q	G	-	E	L	N	L	D	V	S	L	Q	L	P	S	R	S	S	K	I	T	H	R	I	H	W	E	S	A	S	L	L	R	S	E	E	T	K	E	N	E	G	F	T	V	T	A	E	-	G	K	G	Q	G	T	L	S	V	V	T	M	Y	H	A	K	A
E	-	G	V	K	R	E	S	Y	S	G	V	T	L	D	P	R	G	I	Y	G	T	I	S	R	R	K	E	F	P	Y	R	I	P	L	D	L	V	P	K	T	E	I	K	R	I	L	S	V	K	G	L	R	L	S	M	D	I	D	V	S	Y	K	H	K	G	A	L	H	N	Y	K	M	T	D	K	N	-	F	L	G	R	P	V	E	V	L	L	N	D	D	L	I	V	S	T	G	F	G	S	G	L	A	T	V	H	V	T	T	V	V	H	K	T	S

									10										20										30										40										50										60										70										80										90										100										110
E	G	I	R	M	N	K	T	V	A	V	R	T	L	D	P	E	R	L	G	R	E	G	V	Q	K	E	D	I	P	P	A	D	L	S	D	Q	V	P	D	T	E	S	E	T	R	I	L	L	Q	G	-	E	L	N	L	D	V	S	L	Q	L	P	S	R	S	S	K	I	T	H	R	I	H	W	E	S	A	S	L	L	R	S	E	E	T	K	E	N	E	G	F	T	V	T	A	E	-	G	K	G	Q	G	T	L	S	V	V	T	M	Y	H	A	K	A
E	-	G	V	K	R	E	S	Y	S	G	V	T	L	D	P	R	G	I	Y	G	T	I	S	R	R	K	E	F	P	Y	R	I	P	L	D	L	V	P	K	T	E	I	K	R	I	L	S	V	K	G	L	R	L	S	M	D	I	D	V	S	Y	K	H	K	G	A	L	H	N	Y	K	M	T	D	K	N	-	F	L	G	R	P	V	E	V	L	L	N	D	D	L	I	V	S	T	G	F	G	S	G	L	A	T	V	H	V	T	T	V	V	H	K	T	S

									10										20										30										40										50										60										70										80										90										100										110
E	G	I	R	M	N	K	T	V	A	V	R	T	L	D	P	E	R	L	G	R	E	G	V	Q	K	E	D	I	P	P	A	D	L	S	D	Q	V	P	D	T	E	S	E	T	R	I	L	L	Q	G	-	E	L	N	L	D	V	S	L	Q	L	P	S	R	S	S	K	I	T	H	R	I	H	W	E	S	A	S	L	L	R	S	E	E	T	K	E	N	E	G	F	T	V	T	A	E	-	G	K	G	Q	G	T	L	S	V	V	T	M	Y	H	A	K	A
E	-	G	V	K	R	E	S	Y	S	G	V	T	L	D	P	R	G	I	Y	G	T	I	S	R	R	K	E	F	P	Y	R	I	P	L	D	L	V	P	K	T	E	I	K	R	I	L	S	V	K	G	L	R	L	S	M	D	I	D	V	S	Y	K	H	K	G	A	L	H	N	Y	K	M	T	D	K	N	-	F	L	G	R	P	V	E	V	L	L	N	D	D	L	I	V	S	T	G	F	G	S	G	L	A	T	V	H	V	T	T	V	V	H	K	T	S