PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

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d2b9da1  (  44 )       qpyaVvasCayceklvrltvladhsairqleemll-slnivCplCtl
d2ewla1  (   5 )    aepqrhkilcvCckcdgrieltvessaedlrtlqqlflstlsfvcpwCat
                        bbbbbbb      bbbbbbb  aaaaaaaaaaa             

                       
d2b9da1  (  91 )    qrq
d2ewla1  (  55 )    nq

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d2b9da1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2b9da1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	E7 oncoprotein	E7 C-terminal domain-like	Human papillomavirus type 1a [TaxId: 10583]		view
d2ewla1 # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d2ewla1 # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	E7 oncoprotein	E7 C-terminal domain-like	Human papillomavirus type 45 [TaxId: 10593]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	Q	P	Y	A	V	V	A	S	C	A	Y	C	E	K	L	V	R	L	T	V	L	A	D	H	S	A	I	R	Q	L	E	E	M	L	L	-	S	L	N	I	V	C	P	L	C	T	L	Q	R	Q
A	E	P	Q	R	H	K	I	L	C	V	C	C	K	C	D	G	R	I	E	L	T	V	E	S	S	A	E	D	L	R	T	L	Q	Q	L	F	L	S	T	L	S	F	V	C	P	W	C	A	T	N	Q	-

Member	Chain	UniProtKB	GO term
d2b9da1	A	P06465	GO:0003677
d2b9da1	A	P06465	GO:0003700
d2b9da1	A	P06465	GO:0006355
d2ewla1	A	P21736	GO:0003677
d2ewla1	A	P21736	GO:0003700
d2ewla1	A	P21736	GO:0006355

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-	-	-	Q	P	Y	A	V	V	A	S	C	A	Y	C	E	K	L	V	R	L	T	V	L	A	D	H	S	A	I	R	Q	L	E	E	M	L	L	-	S	L	N	I	V	C	P	L	C	T	L	Q	R	Q
A	E	P	Q	R	H	K	I	L	C	V	C	C	K	C	D	G	R	I	E	L	T	V	E	S	S	A	E	D	L	R	T	L	Q	Q	L	F	L	S	T	L	S	F	V	C	P	W	C	A	T	N	Q	-

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-	-	-	Q	P	Y	A	V	V	A	S	C	A	Y	C	E	K	L	V	R	L	T	V	L	A	D	H	S	A	I	R	Q	L	E	E	M	L	L	-	S	L	N	I	V	C	P	L	C	T	L	Q	R	Q
A	E	P	Q	R	H	K	I	L	C	V	C	C	K	C	D	G	R	I	E	L	T	V	E	S	S	A	E	D	L	R	T	L	Q	Q	L	F	L	S	T	L	S	F	V	C	P	W	C	A	T	N	Q	-

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-	-	-	Q	P	Y	A	V	V	A	S	C	A	Y	C	E	K	L	V	R	L	T	V	L	A	D	H	S	A	I	R	Q	L	E	E	M	L	L	-	S	L	N	I	V	C	P	L	C	T	L	Q	R	Q
A	E	P	Q	R	H	K	I	L	C	V	C	C	K	C	D	G	R	I	E	L	T	V	E	S	S	A	E	D	L	R	T	L	Q	Q	L	F	L	S	T	L	S	F	V	C	P	W	C	A	T	N	Q	-