PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d5b5eb-  (   2 )                glpwyrvhtvlindpGrliAahlmhtAlvagwaGsmAl
d5b5ec-  (  20 )    sifatnrdqessgfawwagnarlinlSGkllGahvahaGlivfwaGamTl
                                   33333333   aaaaaaaaaaaaaaaaaaaaaaaa

                             60        70        80        90        100 
d5b5eb-  (  40 )    yElatFdpsdpvLNpMWRqgMfvLPfmArlGvtGSwsgwSItgetgidpg
d5b5ec-  (  70 )    fElahFipe----kpMYeqgLilIPhiAtlGwGVgpgGeVv--------d
                    aaaaa          333     aaaaaa                     

                             110       120       130       140       150 
d5b5eb-  (  90 )    fwSFeGvAlahivlsgllflaAcwhwv--ywdlelfrdptgepal-----
d5b5ec-  ( 108 )    tfpFfvvGvvhlisSavlgfgGvyhairGpetLeeyss--ffGydwkdkn
                       aaaaaaaaaaaaaaaaaaaaaaaa                       

                             160       170       180       190       200 
d5b5eb-  ( 134 )    dlpkmfGihlflaGllcfgfGafhLtGlfgpGMWvsd-pyGltGsvqpv-
d5b5ec-  ( 156 )    kmttilGfhlivlGigalllva-kAmf--fgGLYDTwapg--gGdvrvIt
                     aaaaaaaaaaaaaaaaaaaaa          bbb         bbb   

                             210       220       230       240       250 
d5b5eb-  ( 182 )    apewg-pdgfnp---------------ynpgGvVahhiaaGivgiiaGlf
d5b5ec-  ( 201 )    nptldprvifgyllkspfggegwivsvnnLedvVGghiwiGliciagGiw
                                                 aaaaaaaaaaaaaaaaaaaaa

                             260       270       280       290       300 
d5b5eb-  ( 216 )    hilvrppqrlykalrmgnietvlsssiaavffaafvvagtMwygSatTpi
d5b5ec-  ( 251 )    hilttpfgwarrafiw-sGeAylSyslgalSmmgfiatcfVwfNnTvyPS
                    aaa    aaaaaa     aaaaaaaaaaaaaaaaaaaaaaaaa      a

                             310       320       330       340       350 
d5b5eb-  ( 266 )    eLFGPTryqwdssyFqqeInrrVqaslas---------------------
d5b5ec-  ( 300 )    eFYGPTgpEAs--QAqaMtfLIrdqkl--ganVgsaqgptglgkyLmrSp
                    aaa   aaaaa  aaaaaaaaaaaaa                        

                             360       370       380       390       400 
d5b5eb-  ( 295 )    ----------------------------gatleeAWsaIpekLAFYD--Y
d5b5ec-  ( 346 )    tgeiIFGgeTmrfwdfrGpWLepLrgpngLdlnkIkndiqpwQerrAaeY
                                                   aaaaaa   aaaaaa    

                             410       420       430       440       450 
d5b5eb-  ( 315 )    IGNNPaKGglfrtgpMNkGdGiAqaWkGhAVFrnegeeLfVrrMpAffes
d5b5ec-  ( 396 )    mthaP-lGsl-------------nsvGgva--------------------
                                                                      

                             460       470       480       490       500 
d5b5eb-  ( 366 )    fpViLtdkngvvkAdipfrraeskysFeqqgVtVsFyGgelngqtftdpp
d5b5ec-  ( 412 )    --------------------------------------------------
                                                                      

                             510       520       530       540       550 
d5b5eb-  ( 416 )    tVksyArkaIfGEIFefdtetlnSdgifrtSPRgwftfahavfAllfffg
d5b5ec-  ( 412 )    -----------tei----------nsvnfvSPRswlatshfvlAffflvg
                                                   aaaaaaaaaaaaaaaaaaa

                             560       570       580    
d5b5eb-  ( 466 )    hiwhgarTlfr--dvfsgidp---pvwgykvgdvtt
d5b5ec-  ( 441 )    hlwhagrAraaaagfekgidresepvlsmpsld   
                    aaaaaaaaa

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d5b5eb- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5b5eb- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Photosystem II antenna protein-like	Thermosynechococcus vulcanus [TaxId: 32053]		view
d5b5ec- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5b5ec- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Photosystem II antenna protein-like	Thermosynechococcus vulcanus [TaxId: 32053]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

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-	-	-	-	-	-	-	-	-	-	-	-	G	L	P	W	Y	R	V	H	T	V	L	I	N	D	P	G	R	L	I	A	A	H	L	M	H	T	A	L	V	A	G	W	A	G	S	M	A	L	Y	E	L	A	T	F	D	P	S	D	P	V	L	N	P	M	W	R	Q	G	M	F	V	L	P	F	M	A	R	L	G	V	T	G	S	W	S	G	W	S	I	T	G	E	T	G	I	D	P	G	F	W	S	F	E	G	V	A	L	A	H	I	V	L	S	G	L	L	F	L	A	A	C	W	H	W	V	-	-	Y	W	D	L	E	L	F	R	D	P	T	G	E	P	A	L	-	-	-	-	-	D	L	P	K	M	F	G	I	H	L	F	L	A	G	L	L	C	F	G	F	G	A	F	H	L	T	G	L	F	G	P	G	M	W	V	S	D	-	P	Y	G	L	T	G	S	V	Q	P	V	-	A	P	E	W	G	-	P	D	G	F	N	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Y	N	P	G	G	V	V	A	H	H	I	A	A	G	I	V	G	I	I	A	G	L	F	H	I	L	V	R	P	P	Q	R	L	Y	K	A	L	R	M	G	N	I	E	T	V	L	S	S	S	I	A	A	V	F	F	A	A	F	V	V	A	G	T	M	W	Y	G	S	A	T	T	P	I	E	L	F	G	P	T	R	Y	Q	W	D	S	S	Y	F	Q	Q	E	I	N	R	R	V	Q	A	S	L	A	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	A	T	L	E	E	A	W	S	A	I	P	E	K	L	A	F	Y	D	-	-	Y	I	G	N	N	P	A	K	G	G	L	F	R	T	G	P	M	N	K	G	D	G	I	A	Q	A	W	K	G	H	A	V	F	R	N	E	G	E	E	L	F	V	R	R	M	P	A	F	F	E	S	F	P	V	I	L	T	D	K	N	G	V	V	K	A	D	I	P	F	R	R	A	E	S	K	Y	S	F	E	Q	Q	G	V	T	V	S	F	Y	G	G	E	L	N	G	Q	T	F	T	D	P	P	T	V	K	S	Y	A	R	K	A	I	F	G	E	I	F	E	F	D	T	E	T	L	N	S	D	G	I	F	R	T	S	P	R	G	W	F	T	F	A	H	A	V	F	A	L	L	F	F	F	G	H	I	W	H	G	A	R	T	L	F	R	-	-	D	V	F	S	G	I	D	P	-	-	-	P	V	W	G	Y	K	V	G	D	V	T	T
S	I	F	A	T	N	R	D	Q	E	S	S	G	F	A	W	W	A	G	N	A	R	L	I	N	L	S	G	K	L	L	G	A	H	V	A	H	A	G	L	I	V	F	W	A	G	A	M	T	L	F	E	L	A	H	F	I	P	E	-	-	-	-	K	P	M	Y	E	Q	G	L	I	L	I	P	H	I	A	T	L	G	W	G	V	G	P	G	G	E	V	V	-	-	-	-	-	-	-	-	D	T	F	P	F	F	V	V	G	V	V	H	L	I	S	S	A	V	L	G	F	G	G	V	Y	H	A	I	R	G	P	E	T	L	E	E	Y	S	S	-	-	F	F	G	Y	D	W	K	D	K	N	K	M	T	T	I	L	G	F	H	L	I	V	L	G	I	G	A	L	L	L	V	A	-	K	A	M	F	-	-	F	G	G	L	Y	D	T	W	A	P	G	-	-	G	G	D	V	R	V	I	T	N	P	T	L	D	P	R	V	I	F	G	Y	L	L	K	S	P	F	G	G	E	G	W	I	V	S	V	N	N	L	E	D	V	V	G	G	H	I	W	I	G	L	I	C	I	A	G	G	I	W	H	I	L	T	T	P	F	G	W	A	R	R	A	F	I	W	-	S	G	E	A	Y	L	S	Y	S	L	G	A	L	S	M	M	G	F	I	A	T	C	F	V	W	F	N	N	T	V	Y	P	S	E	F	Y	G	P	T	G	P	E	A	S	-	-	Q	A	Q	A	M	T	F	L	I	R	D	Q	K	L	-	-	G	A	N	V	G	S	A	Q	G	P	T	G	L	G	K	Y	L	M	R	S	P	T	G	E	I	I	F	G	G	E	T	M	R	F	W	D	F	R	G	P	W	L	E	P	L	R	G	P	N	G	L	D	L	N	K	I	K	N	D	I	Q	P	W	Q	E	R	R	A	A	E	Y	M	T	H	A	P	-	L	G	S	L	-	-	-	-	-	-	-	-	-	-	-	-	-	N	S	V	G	G	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	E	I	-	-	-	-	-	-	-	-	-	-	N	S	V	N	F	V	S	P	R	S	W	L	A	T	S	H	F	V	L	A	F	F	F	L	V	G	H	L	W	H	A	G	R	A	R	A	A	A	A	G	F	E	K	G	I	D	R	E	S	E	P	V	L	S	M	P	S	L	D	-	-	-

Member	Chain	UniProtKB	GO term

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-	-	-	-	-	-	-	-	-	-	-	-	G	L	P	W	Y	R	V	H	T	V	L	I	N	D	P	G	R	L	I	A	A	H	L	M	H	T	A	L	V	A	G	W	A	G	S	M	A	L	Y	E	L	A	T	F	D	P	S	D	P	V	L	N	P	M	W	R	Q	G	M	F	V	L	P	F	M	A	R	L	G	V	T	G	S	W	S	G	W	S	I	T	G	E	T	G	I	D	P	G	F	W	S	F	E	G	V	A	L	A	H	I	V	L	S	G	L	L	F	L	A	A	C	W	H	W	V	-	-	Y	W	D	L	E	L	F	R	D	P	T	G	E	P	A	L	-	-	-	-	-	D	L	P	K	M	F	G	I	H	L	F	L	A	G	L	L	C	F	G	F	G	A	F	H	L	T	G	L	F	G	P	G	M	W	V	S	D	-	P	Y	G	L	T	G	S	V	Q	P	V	-	A	P	E	W	G	-	P	D	G	F	N	P	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	Y	N	P	G	G	V	V	A	H	H	I	A	A	G	I	V	G	I	I	A	G	L	F	H	I	L	V	R	P	P	Q	R	L	Y	K	A	L	R	M	G	N	I	E	T	V	L	S	S	S	I	A	A	V	F	F	A	A	F	V	V	A	G	T	M	W	Y	G	S	A	T	T	P	I	E	L	F	G	P	T	R	Y	Q	W	D	S	S	Y	F	Q	Q	E	I	N	R	R	V	Q	A	S	L	A	S	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	G	A	T	L	E	E	A	W	S	A	I	P	E	K	L	A	F	Y	D	-	-	Y	I	G	N	N	P	A	K	G	G	L	F	R	T	G	P	M	N	K	G	D	G	I	A	Q	A	W	K	G	H	A	V	F	R	N	E	G	E	E	L	F	V	R	R	M	P	A	F	F	E	S	F	P	V	I	L	T	D	K	N	G	V	V	K	A	D	I	P	F	R	R	A	E	S	K	Y	S	F	E	Q	Q	G	V	T	V	S	F	Y	G	G	E	L	N	G	Q	T	F	T	D	P	P	T	V	K	S	Y	A	R	K	A	I	F	G	E	I	F	E	F	D	T	E	T	L	N	S	D	G	I	F	R	T	S	P	R	G	W	F	T	F	A	H	A	V	F	A	L	L	F	F	F	G	H	I	W	H	G	A	R	T	L	F	R	-	-	D	V	F	S	G	I	D	P	-	-	-	P	V	W	G	Y	K	V	G	D	V	T	T
S	I	F	A	T	N	R	D	Q	E	S	S	G	F	A	W	W	A	G	N	A	R	L	I	N	L	S	G	K	L	L	G	A	H	V	A	H	A	G	L	I	V	F	W	A	G	A	M	T	L	F	E	L	A	H	F	I	P	E	-	-	-	-	K	P	M	Y	E	Q	G	L	I	L	I	P	H	I	A	T	L	G	W	G	V	G	P	G	G	E	V	V	-	-	-	-	-	-	-	-	D	T	F	P	F	F	V	V	G	V	V	H	L	I	S	S	A	V	L	G	F	G	G	V	Y	H	A	I	R	G	P	E	T	L	E	E	Y	S	S	-	-	F	F	G	Y	D	W	K	D	K	N	K	M	T	T	I	L	G	F	H	L	I	V	L	G	I	G	A	L	L	L	V	A	-	K	A	M	F	-	-	F	G	G	L	Y	D	T	W	A	P	G	-	-	G	G	D	V	R	V	I	T	N	P	T	L	D	P	R	V	I	F	G	Y	L	L	K	S	P	F	G	G	E	G	W	I	V	S	V	N	N	L	E	D	V	V	G	G	H	I	W	I	G	L	I	C	I	A	G	G	I	W	H	I	L	T	T	P	F	G	W	A	R	R	A	F	I	W	-	S	G	E	A	Y	L	S	Y	S	L	G	A	L	S	M	M	G	F	I	A	T	C	F	V	W	F	N	N	T	V	Y	P	S	E	F	Y	G	P	T	G	P	E	A	S	-	-	Q	A	Q	A	M	T	F	L	I	R	D	Q	K	L	-	-	G	A	N	V	G	S	A	Q	G	P	T	G	L	G	K	Y	L	M	R	S	P	T	G	E	I	I	F	G	G	E	T	M	R	F	W	D	F	R	G	P	W	L	E	P	L	R	G	P	N	G	L	D	L	N	K	I	K	N	D	I	Q	P	W	Q	E	R	R	A	A	E	Y	M	T	H	A	P	-	L	G	S	L	-	-	-	-	-	-	-	-	-	-	-	-	-	N	S	V	G	G	V	A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	T	E	I	-	-	-	-	-	-	-	-	-	-	N	S	V	N	F	V	S	P	R	S	W	L	A	T	S	H	F	V	L	A	F	F	F	L	V	G	H	L	W	H	A	G	R	A	R	A	A	A	A	G	F	E	K	G	I	D	R	E	S	E	P	V	L	S	M	P	S	L	D	-	-	-

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									10										20										30										40										50										60										70										80										90										100										110										120										130										140										150										160										170										180										190										200										210										220										230										240										250										260										270										280										290										300										310										320										330										340										350										360										370										380										390										400										410										420										430										440										450										460										470										480										490										500										510										520										530										540										550										560										570										580
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