PASS2.8 - Home

solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x

beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x

hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x

                             10        20        30        40        50  
d5b5ee-  (   6 )    gerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsy
d5b5ef-  (  12 )         sypiftvrwvavhtlavptifflgaiaamqf--------------
                               aaaaaaaaaaaaaaaaaaaaaaa                

                             60        70      
d5b5ee-  (  56 )    yaqeqsiplvtdrfeakqvetfleqlk
d5b5ef-  (  43 )    -iqr

Domains
Outliers

Domain ID	Name	Family	Source	Domain	STRING-DB
d5b5ee- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5b5ee- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	Cytochrome b559 subunit alpha, PsbE	Cytochrome b559 subunits	Thermosynechococcus vulcanus [TaxId: 32053]		view
d5b5ef- # Domain Specific Files ATM file: Atomic coordinates by ASTRAL ATM2ALI file: Amino acid sequences by ATM2ALI SST file: Secondary structure by SSTRUC PSA file: solvent accessibility by PSA HBD file: Hydrogen bonds by HBOND PSE file: PyMol session file for conserved interactions PDBSUM1: Topological diagram d5b5ef- # Links to other databases and tools RCSB-PDB: Research Collaboratory for Structural Bioinformatics SCOP: Structural Classification of Proteins EBI: European Bioinformatics Institute HOMSTRAD: Homologous Structure Alignment Database DDBASE: Dial-Derived Domain Database CATH: Class Architecture Topology and Homologous sfily PALI: Phylogeny and ALIgnment of homologous protein structures MODBASE: A Database of Annotated Comparative Protein Structure Models 3Dee: A Database of Protein Domain Definition PQS: Protein Quaternary Structure Query Form at the EBI LPC/CSU: Ligand-Protein Contacts & Contacts of Structural LPFC: A Library of Protein Family Cores MMDB: Molecular Modelling DataBase,NCBI CE: Databases and Tools for 3-D Protein Structure Comparison and Alignment PDBSUM: Summaries and structural analyses of PDB data files Pfam: Protein families database of alignments and HMMs	automated matches	Cytochrome b559 subunits	Thermosynechococcus vulcanus [TaxId: 32053]		view

No outliers

Feature	Download
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

									10										20										30										40										50										60										70
G	E	R	P	F	S	D	I	I	T	S	V	R	Y	W	V	I	H	S	I	T	I	P	A	L	F	I	A	G	W	L	F	V	S	T	G	L	A	Y	D	V	F	G	T	P	R	P	D	S	Y	Y	A	Q	E	Q	S	I	P	L	V	T	D	R	F	E	A	K	Q	V	E	T	F	L	E	Q	L	K
-	-	-	-	-	S	Y	P	I	F	T	V	R	W	V	A	V	H	T	L	A	V	P	T	I	F	F	L	G	A	I	A	A	M	Q	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	Q	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Member	Chain	UniProtKB	GO term

									10										20										30										40										50										60										70
G	E	R	P	F	S	D	I	I	T	S	V	R	Y	W	V	I	H	S	I	T	I	P	A	L	F	I	A	G	W	L	F	V	S	T	G	L	A	Y	D	V	F	G	T	P	R	P	D	S	Y	Y	A	Q	E	Q	S	I	P	L	V	T	D	R	F	E	A	K	Q	V	E	T	F	L	E	Q	L	K
-	-	-	-	-	S	Y	P	I	F	T	V	R	W	V	A	V	H	T	L	A	V	P	T	I	F	F	L	G	A	I	A	A	M	Q	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	Q	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70
G	E	R	P	F	S	D	I	I	T	S	V	R	Y	W	V	I	H	S	I	T	I	P	A	L	F	I	A	G	W	L	F	V	S	T	G	L	A	Y	D	V	F	G	T	P	R	P	D	S	Y	Y	A	Q	E	Q	S	I	P	L	V	T	D	R	F	E	A	K	Q	V	E	T	F	L	E	Q	L	K
-	-	-	-	-	S	Y	P	I	F	T	V	R	W	V	A	V	H	T	L	A	V	P	T	I	F	F	L	G	A	I	A	A	M	Q	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	Q	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

									10										20										30										40										50										60										70
G	E	R	P	F	S	D	I	I	T	S	V	R	Y	W	V	I	H	S	I	T	I	P	A	L	F	I	A	G	W	L	F	V	S	T	G	L	A	Y	D	V	F	G	T	P	R	P	D	S	Y	Y	A	Q	E	Q	S	I	P	L	V	T	D	R	F	E	A	K	Q	V	E	T	F	L	E	Q	L	K
-	-	-	-	-	S	Y	P	I	F	T	V	R	W	V	A	V	H	T	L	A	V	P	T	I	F	F	L	G	A	I	A	A	M	Q	F	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	I	Q	R	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-