Superfamily : 161008 [ Viral glycoprotein ectodomain-like ]
Class : Multi-domain proteins (alpha and beta)
Fold : Viral glycoprotein ectodomain-like
# of Members : 3
Superposed Structure
solvent inaccessible: UPPER CASE X
solvent accesible: lower case x
alpha helix: red x
beta strand: blue x
3 - 10 helix: maroon x
hydrogen bond to main chain amide: bold x
hydrogen bond to mainchain carbonyl: underline x
disulphide bond: cedilla
positive phi: italic x
 
                             10        20        30        40        50  
d3nwaa-  ( 104 )    ikAentdanFyVÇppPtgatvvqfeqprrçptrpe---------------
d5mdmc-  (   1 )                               ylsIAFPentkLdWKpVtkntry
d6tita-  (   1 )                               kftivFPhnqkGnWknvpsnYhy
                                                                      

                             60        70        80        90        100 
d3nwaa-  ( 139 )    -----------gqnyteGIAVVFkeni---apykfkAtMyyKdVtvSVrf
d5mdmc-  (  24 )    ÇpmGgewflep--glqeesflssTPIgaTpsksdGflÇhAAkwVTtÇdfr
d6tita-  (  24 )    çPsSsDlnWhn--dligtalqvkmpksHkaiqAdGwMÇHASkWvttÇdfr
                                   bbbbbbbbb          bbbbbbbbbbbbb   

                             110       120       130       140       150 
d3nwaa-  ( 176 )    grysqfmgifedrApVp---feEVidkInakGvÇrStAkyvrnnlettaf
d5mdmc-  (  72 )    wygpkyithsihnikPtrsdÇdtalasyksgtlvslgfPp-----esçgy
d6tita-  (  72 )    wygpkyithSirsftPsveqÇkeSieqtkqgtwlnpgfpp-----qsçgy
                             bbbb       aaaaaa aa                     

                             160       170       180       190       200 
d3nwaa-  ( 224 )    hrddhetdmeLpanaatrtsrgWhTtdlkynPsrveafhryGtTVnÇiVe
d5mdmc-  ( 117 )    ----------as----------------------------vtdseflVim
d6tita-  ( 117 )    ----------at----------------------------vtdaeavivq
                                                               bbbbbbb

                             210       220       230       240       250 
d3nwaa-  ( 275 )    eVdArS-vypYd-eFvLatgdfVyMSPFyGyregshtehtsyaadrFkQv
d5mdmc-  ( 129 )    ItphhVGvDDYrGhWVDp-----LFvggeçdq------------------
d6tita-  ( 129 )    vtpHhvlvDEYtGewvDS-----qFingkçsn------------------
                    bbb           bb                                  

                             260       270       280       290       300 
d3nwaa-  ( 323 )    dgfyardlttkarataptTrNLLtTpkFTVAWdwvpkrpsVçTMtkwqeV
d5mdmc-  ( 156 )    ------------------syÇdTihnssvWIPadqtkk--niçgqsFtpL
d6tita-  ( 156 )    ------------------yiÇptvhnsttWHsdy-kvk--glçdsnlism
                                        bb      bbbb               bbb

                             310       320       330       340       350 
d3nwaa-  ( 373 )    deMlRSeyg--------gsFrFsSdaisTTFtTnlt-EyplsrVdlGdçI
d5mdmc-  ( 186 )    tVtVAYdktk--eIaagg-IvFkSk---YHshmeGarTçr---lsyçg--
d6tita-  ( 185 )    ditFFSedgelsSlgkeg-tGFrsn---yFAYetGgkAçk---mqyçk--
                    bbbbbb             bbbb         bb                

                             360       370       380       390       400 
d3nwaa-  ( 414 )    gkdArdAMdrIfarrYnathikVgqpQyYlAnggFLIAYQPLlsntlael
d5mdmc-  ( 225 )    -------------------------rnGIkFpngEWVsLdv------ktr
d6tita-  ( 226 )    -------------------------hwGvrlpsGvWFeMad------kd-
                                               bbb     bbb            

                             410       420       430       440       450 
d3nwaa-  ( 464 )    yvehlrEqsrkppv---erIkttssiefArlqftynhiqrhvndmlgrva
d5mdmc-  ( 244 )    IqekhLLpl-FkeÇpagtevr-S-Tlqsa-----qvlts----------e
d6tita-  ( 244 )    ----lfaaArFpeÇpegssisAp-sqtsvd----vsliq----------d
                                                                      

                             460       470       480       490       500 
d3nwaa-  ( 526 )    iawçelqnheltlwnearkl---npnaiAsvtvg--rrVSArmlg----d
d5mdmc-  ( 278 )    iQrildyslÇqnTWdkverkeplspldLSyLAskSPgkGLAYTvingtlS
d6tita-  ( 275 )    verildyslÇqetWskiraglpisPvdlSylaPknPgtGPAFtiingtlk
                    aaaaaaaaaaaaaaaaaa      aaaaa         bbbbb       

                             510       520       530       540       550 
d3nwaa-  ( 567 )    vMAvstÇvpVaadnViVqnsMrIs-----srpgaÇysrPlVsFrydqgpl
d5mdmc-  ( 328 )    FAhtRYVrMwIdgpvlkepkGkrespsgi----ssdIWtqwfkygd----
d6tita-  ( 325 )    YFEtRYiRvdiaapilsrMvGmi-sgttt----erelWddWapYed----
                     bbbbb bbb    bb                 bbb     bbb      

                             560       570       580       590       600 
d3nwaa-  ( 613 )    veGQLgenneLrltrdaiepçtvgHrryFtFG--gGyVYFeeYayshQls
d5mdmc-  ( 370 )    --meIGPNGLlkta------------ggykFpwhLigmelhelse     
d6tita-  ( 366 )    --veiGPnGvlrts------------sgyKFPlymig--------hg---
                      bbb 333 bb               bbb                    

                             610       620       630       640       650 
d3nwaa-  ( 661 )    radittvstfidlnitmledhefvplevytrheikdsglldytevqrrnq
d5mdmc-                                                               
d6tita-  ( 391 )    ------------mldsdlhlsskAqvFeHpHiqdAasqlpd---------
                                                                      

                             660       670 
d3nwaa-  ( 711 )    lhdlrfadidtvih        
d5mdmc-                                   
d6tita-  ( 420 )    ---------deslffgdtglsk
 

 

Domain IDNameFamilySourceDomainSTRING-DB
Glycoprotein BGlycoprotein B-likeHuman herpesvirus 1 [TaxId: 10298]view
automated matchesautomated matchesChandipura virus [TaxId: 11272]view
Spike glycoproteinSpike glycoprotein-likeRecombinant vesicular stomatitis indiana virus rvsv-g/gfp [TaxId: 582817]view

 

No outliers

FeatureDownload
Superfamily
Distance Matrix
Conserved Interactions
Cusp Results
Alistat - Alignment Statistics
SMotif - Conserved Structural Motifs
MeanRMS
PCSSE Details
Absolutely Conserved Residues
Highly Conserved Residues

 

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I K A E N T D A N F Y V C P P P T G A T V V Q F E Q P R R C P T R P E - - - - - - - - - - - - - - - - - - - - - - - - - - G Q N Y T E G I A V V F K E N I - - - A P Y K F K A T M Y Y K D V T V S V R F G R Y S Q F M G I F E D R A P V P - - - F E E V I D K I N A K G V C R S T A K Y V R N N L E T T A F H R D D H E T D M E L P A N A A T R T S R G W H T T D L K Y N P S R V E A F H R Y G T T V N C I V E E V D A R S - V Y P Y D - E F V L A T G D F V Y M S P F Y G Y R E G S H T E H T S Y A A D R F K Q V D G F Y A R D L T T K A R A T A P T T R N L L T T P K F T V A W D W V P K R P S V C T M T K W Q E V D E M L R S E Y G - - - - - - - - G S F R F S S D A I S T T F T T N L T - E Y P L S R V D L G D C I G K D A R D A M D R I F A R R Y N A T H I K V G Q P Q Y Y L A N G G F L I A Y Q P L L S N T L A E L Y V E H L R E Q S R K P P V - - - E R I K T T S S I E F A R L Q F T Y N H I Q R H V N D M L G R V A I A W C E L Q N H E L T L W N E A R K L - - - N P N A I A S V T V G - - R R V S A R M L G - - - - D V M A V S T C V P V A A D N V I V Q N S M R I S - - - - - S R P G A C Y S R P L V S F R Y D Q G P L V E G Q L G E N N E L R L T R D A I E P C T V G H R R Y F T F G - - G G Y V Y F E E Y A Y S H Q L S R A D I T T V S T F I D L N I T M L E D H E F V P L E V Y T R H E I K D S G L L D Y T E V Q R R N Q L H D L R F A D I D T V I H - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - Y L S I A F P E N T K L D W K P V T K N T R Y C P M G G E W F L E P - - G L Q E E S F L S S T P I G A T P S K S D G F L C H A A K W V T T C D F R W Y G P K Y I T H S I H N I K P T R S D C D T A L A S Y K S G T L V S L G F P P - - - - - E S C G Y - - - - - - - - - - A S - - - - - - - - - - - - - - - - - - - - - - - - - - - - V T D S E F L V I M I T P H H V G V D D Y R G H W V D P - - - - - L F V G G E C D Q - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - S Y C D T I H N S S V W I P A D Q T K K - - N I C G Q S F T P L T V T V A Y D K T K - - E I A A G G - I V F K S K - - - Y H S H M E G A R T C R - - - L S Y C G - - - - - - - - - - - - - - - - - - - - - - - - - - - R N G I K F P N G E W V S L D V - - - - - - K T R I Q E K H L L P L - F K E C P A G T E V R - S - T L Q S A - - - - - Q V L T S - - - - - - - - - - E I Q R I L D Y S L C Q N T W D K V E R K E P L S P L D L S Y L A S K S P G K G L A Y T V I N G T L S F A H T R Y V R M W I D G P V L K E P K G K R E S P S G I - - - - S S D I W T Q W F K Y G D - - - - - - M E I G P N G L L K T A - - - - - - - - - - - - G G Y K F P W H L I G M E L H E L S E - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - K F T I V F P H N Q K G N W K N V P S N Y H Y C P S S S D L N W H N - - D L I G T A L Q V K M P K S H K A I Q A D G W M C H A S K W V T T C D F R W Y G P K Y I T H S I R S F T P S V E Q C K E S I E Q T K Q G T W L N P G F P P - - - - - Q S C G Y - - - - - - - - - - A T - - - - - - - - - - - - - - - - - - - - - - - - - - - - V T D A E A V I V Q V T P H H V L V D E Y T G E W V D S - - - - - Q F I N G K C S N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Y I C P T V H N S T T W H S D Y - K V K - - G L C D S N L I S M D I T F F S E D G E L S S L G K E G - T G F R S N - - - Y F A Y E T G G K A C K - - - M Q Y C K - - - - - - - - - - - - - - - - - - - - - - - - - - - H W G V R L P S G V W F E M A D - - - - - - K D - - - - - L F A A A R F P E C P E G S S I S A P - S Q T S V D - - - - V S L I Q - - - - - - - - - - D V E R I L D Y S L C Q E T W S K I R A G L P I S P V D L S Y L A P K N P G T G P A F T I I N G T L K Y F E T R Y I R V D I A A P I L S R M V G M I - S G T T T - - - - E R E L W D D W A P Y E D - - - - - - V E I G P N G V L R T S - - - - - - - - - - - - S G Y K F P L Y M I G - - - - - - - - H G - - - - - - - - - - - - - - - M L D S D L H L S S K A Q V F E H P H I Q D A A S Q L P D - - - - - - - - - - - - - - - - - - D E S L F F G D T G L S K

 

 

 

 

 

Member Chain UniProtKB GO term
 
Contact: Prof. R. Sowdhamini - mini@ncbs.res.in